mRNA_H-elongata_contig112581.1024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig112581.1024.1
Unique Name	mRNA_H-elongata_contig112581.1024.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5JQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ12_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.960e-23
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRNI+V
Sbjct:   55 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNISV 170

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.250e-23
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R   GG  D +VL  YGRD +N+NG RL   A +++  + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSV 230

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.140e-22
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  218 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSV 333

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.280e-22
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L ++NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:   55 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSV 170

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.340e-22
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L ++NT F TPK G      +    KE HR  LD+IL+R+ DRRLVRN +V
Sbjct:  115 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASV 230

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.350e-22
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L ++NT F TPK G      +    KE HR  LD+IL+R+ DRRLVRN +V
Sbjct:  227 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASV 342

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5K358_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K358_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.680e-22
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  210 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSV 325

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5KF07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF07_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.700e-22
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  232 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSV 347

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.800e-22
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSV 230

[Close]

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.820e-22
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 1

Query:    1 KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYGRDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRWRLDYILVREHDRRLVRNITV 360
            K  FW  L + + +V + DHL+++MDA  RTG R +G    D +++  YGRD +N+NG RLL  A +++L + NT F TPK GG    F    +K   ++RLD+IL+R+ DRR VRN++V
Sbjct:  794 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQADRRFVRNVSV 909

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot

BLAST of mRNA_H-elongata_contig112581.1024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQ12_9PHAE	1.960e-23	44.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBZ6_9PHAE	7.250e-23	44.17	Endo/exonuclease/phosphatase domain-containing pro...	[more]
A0A6H5KV75_9PHAE	1.140e-22	43.33	Endo/exonuclease/phosphatase domain-containing pro...	[more]
A0A6H5KL25_9PHAE	1.280e-22	43.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC90_9PHAE	1.340e-22	44.17	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JQH5_9PHAE	1.350e-22	44.17	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K358_9PHAE	1.680e-22	43.33	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KF07_9PHAE	1.700e-22	43.33	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L7A7_9PHAE	1.800e-22	43.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1H7_9PHAE	1.820e-22	43.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig112581	contig	H-elongata_contig112581:250..615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	366
Cds size	366
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929647.5547695-CDS-H-elongata_contig112581:249..615	1622929647.5547695-CDS-H-elongata_contig112581:249..615	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig112581 250..615 +
1691679104.4081612-CDS-H-elongata_contig112581:249..615	1691679104.4081612-CDS-H-elongata_contig112581:249..615	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig112581 250..615 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig112581.1024.1	prot_H-elongata_contig112581.1024.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig112581 250..615 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig112581:250..615+
coding sequence from alignment at H-elongata_contig112581:250..615+

protein sequence of mRNA_H-elongata_contig112581.1024.1

>prot_H-elongata_contig112581.1024.1 ID=prot_H-elongata_contig112581.1024.1|Name=mRNA_H-elongata_contig112581.1024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
KSKFWKELRSTVADVPASDHLILMMDAYGRTGGRGEGGGLEDVRVLRPYG
RDTLNDNGSRLLACADEHKLLIVNTLFSTPKRGGNSDAFAYKGSKESHRW
RLDYILVREHDRRLVRNITVHP

mRNA from alignment at H-elongata_contig112581:250..615+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig112581.1024.1 ID=mRNA_H-elongata_contig112581.1024.1|Name=mRNA_H-elongata_contig112581.1024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig112581:250..615+ (Himanthalia elongata Himel1 dioecious)
AAGTCTAAGTTCTGGAAGGAACTTCGCAGCACCGTTGCTGATGTACCTGC
CAGCGACCACCTGATTTTGATGATGGATGCTTACGGCCGTACGGGAGGAA
GGGGAGAGGGAGGTGGACTAGAGGATGTCCGGGTTTTGAGACCATACGGC
AGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCTGACGA
GCACAAGCTGTTGATTGTCAACACCCTTTTCAGCACGCCGAAGCGTGGGG
GAAACTCGGATGCGTTTGCATACAAGGGGTCGAAGGAATCCCACCGCTGG
CGCCTGGACTACATCCTGGTACGCGAGCATGACCGCAGGCTCGTCCGGAA
TATCACTGTCCACCCG

Coding sequence (CDS) from alignment at H-elongata_contig112581:250..615+

>mRNA_H-elongata_contig112581.1024.1 ID=mRNA_H-elongata_contig112581.1024.1|Name=mRNA_H-elongata_contig112581.1024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig112581:250..615+ (Himanthalia elongata Himel1 dioecious)
AAGTCTAAGTTCTGGAAGGAACTTCGCAGCACCGTTGCTGATGTACCTGC
CAGCGACCACCTGATTTTGATGATGGATGCTTACGGCCGTACGGGAGGAA
GGGGAGAGGGAGGTGGACTAGAGGATGTCCGGGTTTTGAGACCATACGGC
AGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCTGACGA
GCACAAGCTGTTGATTGTCAACACCCTTTTCAGCACGCCGAAGCGTGGGG
GAAACTCGGATGCGTTTGCATACAAGGGGTCGAAGGAATCCCACCGCTGG
CGCCTGGACTACATCCTGGTACGCGAGCATGACCGCAGGCTCGTCCGGAA
TATCACTGTCCACCCGAAGTCTAAGTTCTGGAAGGAACTTCGCAGCACCG
TTGCTGATGTACCTGCCAGCGACCACCTGATTTTGATGATGGATGCTTAC
GGCCGTACGGGAGGAAGGGGAGAGGGAGGTGGACTAGAGGATGTCCGGGT
TTTGAGACCATACGGCAGAGACACTCTCAATGACAACGGGTCGCGACTTC
TAGCATGTGCTGACGAGCACAAGCTGTTGATTGTCAACACCCTTTTCAGC
ACGCCGAAGCGTGGGGGAAACTCGGATGCGTTTGCATACAAGGGGTCGAA
GGAATCCCACCGCTGGCGCCTGGACTACATCCTGGTACGCGAGCATGACC
GCAGGCTCGTCCGGAATATCACTGTCCACCCG