mRNA_H-elongata_contig11256.1023.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A6H5KSI6_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.500e-19 Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 10 EKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLLP 192
EKAFVTG+EAANAVV+ LG+GR + II LE DEPHIQAL+ NGRAKR V +LP + WLLP
Sbjct: 526 EKAFVTGVEAANAVVKRLGVGRDSSIIPLEDDEPHIQALRAVNGRAKRAVKSLPGAGWLLP 586
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A6V7QNU3_ANACO (Amino_oxidase domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QNU3_ANACO) HSP 1 Score: 76.6 bits (187), Expect = 7.710e-15 Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKA+VTGLEAAN VV+ LG G A II++E+DEPHI+AL+ N RA + S LP SD+ L
Sbjct: 374 WSKEKAYVTGLEAANRVVDFLGEGNFAKIIAVEEDEPHIEALRNFNRRANEIRSQLPLSDFFL 436
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A444CL67_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CL67_ENSVE) HSP 1 Score: 70.9 bits (172), Expect = 1.250e-14 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 4 FTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
+++KA+VTGLEAAN VV++LG G A II++E+DEPHIQ L+ N R + + +P+SD+ L
Sbjct: 25 WSKKAYVTGLEAANRVVDYLGEGEFAKIIAVEEDEPHIQTLRSLNRRVNEIRTQIPSSDFFL 86
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A833RFC6_9POAL (15-cis-phytoene desaturase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RFC6_9POAL) HSP 1 Score: 74.7 bits (182), Expect = 3.940e-14 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKA+VTGLEAAN VV++LG G A IIS+E+DE HI+AL+ N RA L + LP S++ L
Sbjct: 466 WSKEKAYVTGLEAANRVVDYLGEGEFAKIISVEEDEAHIEALRSLNRRANELFTQLPISEFFL 528
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: UPI00057A463A (uncharacterized protein LOC105119166 isoform X2 n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057A463A) HSP 1 Score: 71.2 bits (173), Expect = 2.030e-13 Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EK++VTGLE AN VV+ LG G A II LE+DEPHIQAL+ N K L S P S++ L
Sbjct: 177 WSQEKSYVTGLEGANRVVDFLGEGNYAKIIPLEEDEPHIQALRNLNRNFKELSSQFPLSNYFL 239
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A5N5N4B4_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5N4B4_9ROSI) HSP 1 Score: 70.9 bits (172), Expect = 2.270e-13 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 10 EKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
EK++V+GLEAA+ VV+ LG G A II LE+DEPHIQAL+ N K L+S P SD+LL
Sbjct: 163 EKSYVSGLEAASRVVDFLGEGNYAKIIPLEEDEPHIQALRNLNRNFKELMSQFPLSDYLL 222
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A804LA29_MUSAM (Amino_oxidase domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804LA29_MUSAM) HSP 1 Score: 72.4 bits (176), Expect = 2.560e-13 Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKA+VTGLEAAN VV++LG G A II++E+DEPHIQ L+ N R + + +P+ D+ L
Sbjct: 468 WSKEKAYVTGLEAANRVVDYLGEGEFAKIIAVEEDEPHIQTLRSLNRRVNEIRTQIPSFDFFL 530
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: UPI00192A053A (15-cis-phytoene desaturase, chloroplastic/chromoplastic-like isoform X1 n=3 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A053A) HSP 1 Score: 72.4 bits (176), Expect = 2.570e-13 Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKA+VTGLEAAN VV++ G G LA II++E+DEPHI+ L+ N R L + LP SD+ L
Sbjct: 475 WSQEKAYVTGLEAANRVVDYFGDGSLAKIIAVEEDEPHIETLRSINRRLGELRAELPLSDFFL 537
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A2K1KXK0_PHYPA (Amino_oxidase domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KXK0_PHYPA) HSP 1 Score: 72.4 bits (176), Expect = 2.580e-13 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKAFVTGLEAAN VV+ G LA II ++ DEPH+Q L+R N AK LV LP +++ L
Sbjct: 523 WSQEKAFVTGLEAANRVVDQFEQGELASIIPVDADEPHVQELRRVNETAKALVKQLPFANYFL 585
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Match: A0A843WDJ1_COLES (Amino_oxidase domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WDJ1_COLES) HSP 1 Score: 72.0 bits (175), Expect = 2.670e-13 Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKRLVSALPASDWLL 189
W EKA+VTGLEAAN VV++LG G A II++E+DEPHI+AL+ N R + LP S++LL
Sbjct: 283 WGQEKAYVTGLEAANRVVDYLGEGDFAKIIAVEEDEPHIEALRSINRRINETRAQLPFSEFLL 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11256.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11256.1023.1 >prot_H-elongata_contig11256.1023.1 ID=prot_H-elongata_contig11256.1023.1|Name=mRNA_H-elongata_contig11256.1023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp WFTEKAFVTGLEAANAVVEHLGLGRLADIISLEQDEPHIQALKRANGRAKback to top mRNA from alignment at H-elongata_contig11256:8628..8822- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11256.1023.1 ID=mRNA_H-elongata_contig11256.1023.1|Name=mRNA_H-elongata_contig11256.1023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig11256:8628..8822- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11256:8628..8822- >mRNA_H-elongata_contig11256.1023.1 ID=mRNA_H-elongata_contig11256.1023.1|Name=mRNA_H-elongata_contig11256.1023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig11256:8628..8822- (Himanthalia elongata Himel1 dioecious)back to top |