mRNA_H-elongata_contig112507.1020.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI) HSP 1 Score: 150 bits (379), Expect = 3.900e-45 Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1
Query: 13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEA-----GDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
LG +VS GLL +LHAGYSAAHFQQFKKP+ A GDSA LDA +EA+VGFF+CV GVL SA+ LPIKGAAGGGK+LDSAESTREF VFEHRG+SLRRR+A+
Sbjct: 4 LGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 108
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.280e-26 Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query: 13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTE-----AGDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAESTREFHVFEHRGKSLRRR 303
LG IV+ LGLL +LHAGYSAAH++QF E A D+ LDAVVE IVGF +CV GV+S+A + LP++G AGGG++ D+ E F VF HR LRRR
Sbjct: 4 LGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRR 105
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: H3H2C3_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3H2C3_PHYRM) HSP 1 Score: 68.2 bits (165), Expect = 1.110e-12 Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSAS--LDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
G ++ +G L ++HAGY + ++ + K TE D+ + VVE +V F I +VGVL ++ LPI+ A ++L + S+ +FHVF HRGK+L +R+ +
Sbjct: 5 GKLLIAVGALLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVVSFLISLVGVLLTSGELLPIRSNDAMHSRSLATVISSPDFHVFNHRGKALHKRVIS 106
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.250e-11 Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSAS--LDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
+G ++ +G L ++HA Y + ++ + K TE D+ + VVE +V F I +VGVL ++ LPI+ A ++L + S+ +FHVF HRGK+L +R+ +
Sbjct: 4 IGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDAPMPPFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRVIS 106
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A5D6XQS2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQS2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 5.020e-11 Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSLRRRLA 309
G + +G L +LHAGY + + ++ K E D+ + V+E ++ F I + GVL +A LPI+ G++L + S+ +FHVF HRGK+L +R+A
Sbjct: 5 GKLFIAIGSLLLLHAGYYSVKYAEYVKLAEVTDAKLPPTEVVLELVLAFAISLAGVLVTAGELLPIRSNKRLHGRSLATVISSPDFHVFNHRGKALHKRIA 105
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A7S0GCH7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCH7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.620e-11 Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 1
Query: 22 IVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAEST-REFHVFEHRGKSL 294
I+++ G++ ILH+ YS H++ TE S +D V+E + GFF+C++G+ S F+ IK A L S R+F ++ RGK L
Sbjct: 9 IMTIFGVIFILHSAYSCLHYRSLFDATETPKSPPMDVVIEVLTGFFMCLIGIFGSVGPFVEIKTTAANKVVLVSPPHRGRDFDIYSTRGKVL 100
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: M4C506_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C506_HYAAE) HSP 1 Score: 60.1 bits (144), Expect = 1.390e-9 Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSL 294
G ++ LG L ++HAGY + ++ + K TE D+ ++ ++E V F + +VGVL ++ +PI+ A ++L + S EFHVF HRGKSL
Sbjct: 5 GKLLIALGALLLVHAGYYSVQYENYAKLTETLDARLPPVEVLIELAVAFGLSLVGVLLTSGEMVPIRSNDALHYRSLATVVSCPEFHVFNHRGKSL 100
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A2D4BHJ5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ5_PYTIN) HSP 1 Score: 60.1 bits (144), Expect = 1.560e-9 Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLA 309
G ++ +G+L +LHAGY + ++++ + E D+ +VE ++ F + +VGVL A I+ A ++L S S +FHVF HRGK+L +R+A
Sbjct: 4 GKLLITVGVLLLLHAGYYSVQYEEYVRVLEISDAQLPPFAVIVELVLSFVLSLVGVLLVAGDLQHIRSNDALHSRSLPSVTSVPDFHVFNHRGKALHKRIA 104
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A7RYN2_NEMVE (Membrane magnesium transporter n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYN2_NEMVE) HSP 1 Score: 57.0 bits (136), Expect = 2.700e-8 Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGD-SASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSL 294
LG ++ G+LAILHAGYSA + + K E S LD ++ ++G + VGV+ A F IK AA KT +S + F+ F HRG+++
Sbjct: 4 LGRVLVFFGVLAILHAGYSAVQCRTYYKLLEEEFVSLPLDIYIQCVLGMLLGCVGVVLVAGEFKEIKAAAEMASKTWESLGNRPSFYTFNHRGRAM 99
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: UPI000A2A52AD (membrane magnesium transporter 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A52AD) HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7 Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAG-DSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSL 294
LG I+ +GL+AILHAGYSA + + K E S +D ++ ++G VGV+ A F I+ AA K+ +S + F+ F HRGK L
Sbjct: 4 LGRILVFIGLVAILHAGYSAVQCRTYYKLLEEEFTSLPVDIFIQCLLGMLFGCVGVVLVAGEFKEIRAAAEMASKSWESLGNRPSFYTFNHRGKKL 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112507.1020.1 >prot_H-elongata_contig112507.1020.1 ID=prot_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MRGSLGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSASLDAVVEAIVback to top mRNA from alignment at H-elongata_contig112507:912..1229- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112507.1020.1 ID=mRNA_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig112507:912..1229- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112507:912..1229- >mRNA_H-elongata_contig112507.1020.1 ID=mRNA_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig112507:912..1229- (Himanthalia elongata Himel1 dioecious)back to top |