mRNA_H-elongata_contig112502.1018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112502.1018.1
Unique NamemRNA_H-elongata_contig112502.1018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: D8LBV6_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.260e-16
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 SLANKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            SLANKDEAEKCRD+A KFL++GE  KAVRFFEKSLRLYPLPGVE+L+ +AK
Sbjct:    4 SLANKDEAEKCRDLAAKFLQQGEHGKAVRFFEKSLRLYPLPGVESLLDLAK 54
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A6H5JQ06_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ06_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    7 SLANKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            SLANKDEAEKCRD+A KFL++GE  KAVRFFEKSLRLYPLPGVE+L+ +AK
Sbjct:    4 SLANKDEAEKCRDLAAKFLQQGEHGKAVRFFEKSLRLYPLPGVESLLDLAK 54
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A024G1H2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1H2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.870e-11
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            NKDEAEKCRD+  K+L+    QKAV+FF+KS+RLYPLPGVEAL   AK
Sbjct: 2509 NKDEAEKCRDLGIKYLQESSYQKAVKFFDKSIRLYPLPGVEALRYRAK 2556
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A2D4C5Y2_PYTIN (DnaJ subfamily B protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5Y2_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 1.940e-10
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            NK EAE+CRD+AKKFL  G  Q+A++FFEKS R+YPLPGVEA+   A+
Sbjct:    4 NKGEAERCRDVAKKFLREGRYQQAIKFFEKSHRMYPLPGVEAMCERAR 51
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A2D4C3Q5_PYTIN (DnaJ subfamily B protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3Q5_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            NK EAE+CRD+AKKFL  G  Q+A++FFEKS R+YPLPGVEA+   A+
Sbjct:    4 NKGEAERCRDVAKKFLREGRYQQAIKFFEKSHRMYPLPGVEAMCERAR 51
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A8K1FDU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDU3_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 6.850e-10
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            NK EAEKCRD+AK+FL  G+  +A++FFEKS R+YPLPGVEA+   AK
Sbjct:    4 NKGEAEKCRDIAKRFLREGKYAQAIKFFEKSHRMYPLPGVEAMCDRAK 51
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: F0W297_9STRA (HCG1784313 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W297_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.170e-10
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMRIAK 159
            NKDEAEKCRD+  K+ +    QKAV+FF+KS RLYPLPGVEAL   AK
Sbjct: 2532 NKDEAEKCRDLGIKYFQESNFQKAVKFFDKSTRLYPLPGVEALRYRAK 2579
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BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A7S3GR06_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR06_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-9
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEAL 144
            N+ EAEKCRD+AK FL +GE  KA +FFEKSLRL+PL GV+AL
Sbjct:    1 NQGEAEKCRDIAKAFLSKGEYAKASKFFEKSLRLFPLAGVKAL 43
[Close]
BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: A0A7S3LZ89_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ89_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.610e-8
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEAL 144
            N+ EAEKCRD+AK FL +GE  KA +FFEKSLRL+PL GV+AL
Sbjct:    1 NQGEAEKCRDIAKAFLSKGEYAKASKFFEKSLRLFPLAGVKAL 43
[Close]
BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Match: K3WHQ5_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHQ5_GLOUD)

HSP 1 Score: 56.6 bits (135), Expect = 5.600e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 NKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEAL 144
            NK EAEKCRD+ KK+L  G  ++A +FFEKS R+YPLPGVE +
Sbjct:    4 NKSEAEKCRDIGKKYLRAGNYRQAAKFFEKSHRMYPLPGVEMM 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112502.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBV6_ECTSI1.260e-1680.39Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A6H5JQ06_9PHAE1.480e-1680.39HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A024G1H2_9STRA5.870e-1168.75Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4C5Y2_PYTIN1.940e-1064.58DnaJ subfamily B protein n=1 Tax=Pythium insidiosu... [more]
A0A2D4C3Q5_PYTIN2.040e-1064.58DnaJ subfamily B protein n=1 Tax=Pythium insidiosu... [more]
A0A8K1FDU3_PYTOL6.850e-1064.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W297_9STRA7.170e-1066.67HCG1784313 putative n=1 Tax=Albugo laibachii Nc14 ... [more]
A0A7S3GR06_9STRA1.550e-969.77Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3LZ89_9STRA1.610e-869.77Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3WHQ5_GLOUD5.600e-862.79J domain-containing protein n=1 Tax=Globisporangiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112502contigH-elongata_contig112502:837..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.3e-14
Seed eggNOG ortholog2880.D8LBV6
KEGG koko:K09518
KEGG Pathwayko04141,map04141
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.0810406-CDS-H-elongata_contig112502:836..9951622929647.0810406-CDS-H-elongata_contig112502:836..995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112502 837..995 -
1691679104.2841382-CDS-H-elongata_contig112502:836..9951691679104.2841382-CDS-H-elongata_contig112502:836..995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112502 837..995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112502.1018.1prot_H-elongata_contig112502.1018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112502 837..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112502.1018.1

>prot_H-elongata_contig112502.1018.1 ID=prot_H-elongata_contig112502.1018.1|Name=mRNA_H-elongata_contig112502.1018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MASLANKDEAEKCRDMAKKFLERGEPQKAVRFFEKSLRLYPLPGVEALMR
IAK
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mRNA from alignment at H-elongata_contig112502:837..995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112502.1018.1 ID=mRNA_H-elongata_contig112502.1018.1|Name=mRNA_H-elongata_contig112502.1018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig112502:837..995- (Himanthalia elongata Himel1 dioecious)
ATGGCGTCGCTGGCCAACAAAGATGAGGCGGAGAAGTGCCGCGACATGGC
AAAGAAGTTTCTGGAAAGAGGGGAACCTCAGAAGGCGGTCAGGTTCTTCG
AGAAAAGCCTCCGGCTGTACCCCCTCCCAGGAGTCGAGGCGCTGATGAGA
ATCGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig112502:837..995-

>mRNA_H-elongata_contig112502.1018.1 ID=mRNA_H-elongata_contig112502.1018.1|Name=mRNA_H-elongata_contig112502.1018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig112502:837..995- (Himanthalia elongata Himel1 dioecious)
ATGGCGTCGCTGGCCAACAAAGATGAGGCGGAGAAGTGCCGCGACATGGC
AAAGAAGTTTCTGGAAAGAGGGGAACCTCAGAAGGCGGTCAGGTTCTTCG
AGAAAAGCCTCCGGCTGTACCCCCTCCCAGGAGTCGAGGCGCTGATGAGA
ATCGCCAAGATGGCGTCGCTGGCCAACAAAGATGAGGCGGAGAAGTGCCG
CGACATGGCAAAGAAGTTTCTGGAAAGAGGGGAACCTCAGAAGGCGGTCA
GGTTCTTCGAGAAAAGCCTCCGGCTGTACCCCCTCCCAGGAGTCGAGGCG
CTGATGAGAATCGCCAAG
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