mRNA_H-elongata_contig112478.1015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112478.1015.1
Unique NamemRNA_H-elongata_contig112478.1015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112478.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112478contigH-elongata_contig112478:976..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size796
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112478.1015.1prot_H-elongata_contig112478.1015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112478 1219..1770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.641908-UTR-H-elongata_contig112478:975..12181622929646.641908-UTR-H-elongata_contig112478:975..1218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112478 976..1218 +
1691679104.153607-UTR-H-elongata_contig112478:975..12181691679104.153607-UTR-H-elongata_contig112478:975..1218Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112478 976..1218 +
1622929646.6828666-UTR-H-elongata_contig112478:1770..17711622929646.6828666-UTR-H-elongata_contig112478:1770..1771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112478 1771..1771 +
1691679104.1774392-UTR-H-elongata_contig112478:1770..17711691679104.1774392-UTR-H-elongata_contig112478:1770..1771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112478 1771..1771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.6693041-CDS-H-elongata_contig112478:1218..17701622929646.6693041-CDS-H-elongata_contig112478:1218..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112478 1219..1770 +
1691679104.1617463-CDS-H-elongata_contig112478:1218..17701691679104.1617463-CDS-H-elongata_contig112478:1218..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112478 1219..1770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112478.1015.1

>prot_H-elongata_contig112478.1015.1 ID=prot_H-elongata_contig112478.1015.1|Name=mRNA_H-elongata_contig112478.1015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
MGSAIRETLPPLDQCAVKSKSKLSPLLLPSSHATFQSSSIVPYGQINSTS
SRIPHLLPNQIANPESEPRSESLSFRTGSAKKKIHTAYYHCHTNWCHVPC
GHRGRSDFFLSLLPHVKNVYRLITLENPPQGSRRAIHAFILINQSSRPLS
RSLEMIKVIPSKSTIQLTTSRRQPNTVDLLLNV*
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mRNA from alignment at H-elongata_contig112478:976..1771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112478.1015.1 ID=mRNA_H-elongata_contig112478.1015.1|Name=mRNA_H-elongata_contig112478.1015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig112478:976..1771+ (Himanthalia elongata Himel1 dioecious)
GGGACTAGAAATATAAAAATATTGAAAATGAGAAAATAATTCCGAAAAAG
TAGAGAGCAATATGACAAGTTGTCAAAATTCGGATTCTGTCTGCTAAATA
GACTGTTTTAGTAACGTCGTCTCGATTTAGAACCGATATAAACAAAACAA
CTTACTACTGGGACGGATAATGGAATTGATGCATGATTCTAAACATTAGT
ATACTCGATAAAACAACGTTTACTTGTTCTTCCATTTTGATTGATGGGTT
CCGCAATCCGCGAAACCCTACCCCCGCTGGACCAGTGCGCGGTGAAATCA
AAATCTAAACTCTCACCGTTGTTGTTGCCATCGTCCCATGCGACATTCCA
GTCTTCCTCCATCGTCCCATATGGTCAAATTAACTCCACGAGCAGTCGAA
TTCCACATTTACTCCCTAACCAAATTGCTAACCCAGAGTCCGAACCACGG
AGTGAGTCGTTGTCTTTCCGAACTGGTTCCGCAAAAAAAAAAATCCACAC
TGCATACTACCACTGCCATACAAATTGGTGCCACGTCCCATGTGGACACC
GCGGTCGCAGTGATTTTTTTCTCTCGCTTTTGCCCCACGTCAAAAACGTT
TATCGCCTAATAACCCTTGAAAACCCCCCACAAGGGTCAAGGAGAGCGAT
ACACGCATTTATACTGATAAATCAATCATCGCGCCCATTATCGAGGAGCC
TCGAAATGATAAAAGTGATACCATCAAAATCAACTATTCAGCTGACCACG
AGCAGAAGACAACCAAATACGGTTGACCTTCTGCTAAATGTGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig112478:976..1771+

>mRNA_H-elongata_contig112478.1015.1 ID=mRNA_H-elongata_contig112478.1015.1|Name=mRNA_H-elongata_contig112478.1015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig112478:976..1771+ (Himanthalia elongata Himel1 dioecious)
ATGGGTTCCGCAATCCGCGAAACCCTACCCCCGCTGGACCAGTGCGCGGT
GAAATCAAAATCTAAACTCTCACCGTTGTTGTTGCCATCGTCCCATGCGA
CATTCCAGTCTTCCTCCATCGTCCCATATGGTCAAATTAACTCCACGAGC
AGTCGAATTCCACATTTACTCCCTAACCAAATTGCTAACCCAGAGTCCGA
ACCACGGAGTGAGTCGTTGTCTTTCCGAACTGGTTCCGCAAAAAAAAAAA
TCCACACTGCATACTACCACTGCCATACAAATTGGTGCCACGTCCCATGT
GGACACCGCGGTCGCAGTGATTTTTTTCTCTCGCTTTTGCCCCACGTCAA
AAACGTTTATCGCCTAATAACCCTTGAAAACCCCCCACAAGGGTCAAGGA
GAGCGATACACGCATTTATACTGATAAATCAATCATCGCGCCCATTATCG
AGGAGCCTCGAAATGATAAAAGTGATACCATCAAAATCAACTATTCAGCT
GACCACGAGCAGAAGACAACCAAATACGGTTGACCTTCTGCTAAATGTGT
GAATGGGTTCCGCAATCCGCGAAACCCTACCCCCGCTGGACCAGTGCGCG
GTGAAATCAAAATCTAAACTCTCACCGTTGTTGTTGCCATCGTCCCATGC
GACATTCCAGTCTTCCTCCATCGTCCCATATGGTCAAATTAACTCCACGA
GCAGTCGAATTCCACATTTACTCCCTAACCAAATTGCTAACCCAGAGTCC
GAACCACGGAGTGAGTCGTTGTCTTTCCGAACTGGTTCCGCAAAAAAAAA
AATCCACACTGCATACTACCACTGCCATACAAATTGGTGCCACGTCCCAT
GTGGACACCGCGGTCGCAGTGATTTTTTTCTCTCGCTTTTGCCCCACGTC
AAAAACGTTTATCGCCTAATAACCCTTGAAAACCCCCCACAAGGGTCAAG
GAGAGCGATACACGCATTTATACTGATAAATCAATCATCGCGCCCATTAT
CGAGGAGCCTCGAAATGATAAAAGTGATACCATCAAAATCAACTATTCAG
CTGACCACGAGCAGAAGACAACCAAATACGGTTGACCTTCTGCTAAATGT
GTGA
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