mRNA_H-elongata_contig11246.1014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11246.1014.1
Unique NamemRNA_H-elongata_contig11246.1014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11246.1014.1 vs. uniprot
Match: D7G7C4_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.250e-31
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2 
Query:   50 VLDLKLLPSGTSLTLRMKKQSHITPSPSEFKARQRPDAVEHQPFCGVCATPFTLMVRRQRCQVCGESVCAQCSIDKRYVEG 292
            V DLKL PSGTS TLR+KKQ+  TPSPSEFK+R+R D V+ QPFCGVCA PFTLM+RRQRC VC +SVCA CS DKR+VEG
Sbjct:   44 VKDLKLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVD-QPFCGVCAAPFTLMMRRQRCAVCADSVCAPCSSDKRHVEG 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11246.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7C4_ECTSI7.250e-3174.07FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11246contigH-elongata_contig11246:4808..6035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.5064824-CDS-H-elongata_contig11246:4807..49341622929646.5064824-CDS-H-elongata_contig11246:4807..4934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11246 4808..4934 -
1691679104.1377563-CDS-H-elongata_contig11246:4807..49341691679104.1377563-CDS-H-elongata_contig11246:4807..4934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11246 4808..4934 -
1622929646.582773-CDS-H-elongata_contig11246:5868..60351622929646.582773-CDS-H-elongata_contig11246:5868..6035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11246 5869..6035 -
1691679104.1453493-CDS-H-elongata_contig11246:5868..60351691679104.1453493-CDS-H-elongata_contig11246:5868..6035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11246 5869..6035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11246.1014.1prot_H-elongata_contig11246.1014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11246 4808..6035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11246.1014.1

>prot_H-elongata_contig11246.1014.1 ID=prot_H-elongata_contig11246.1014.1|Name=mRNA_H-elongata_contig11246.1014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
HDCSRSRSCSIGAPPKSPGPEAPSVGDVAHAPHEETVAYHALAFGVQGST
AAGCCGTPALLRSMRDTVHPHGSATALPSVRGERVCTVLHRQALRGR*
back to top

mRNA from alignment at H-elongata_contig11246:4808..6035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11246.1014.1 ID=mRNA_H-elongata_contig11246.1014.1|Name=mRNA_H-elongata_contig11246.1014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-elongata_contig11246:4808..6035- (Himanthalia elongata Himel1 dioecious)
CACGATTGTTCCCGTTCCCGTTCCTGCTCCATTGGCGCCCCCCCAAAAAG
TCCTGGACCTGAAGCTCCTTCCGTCGGGGACGTCGCTCACGCTCCGCATG
AAGAAACAGTCGCATATCACGCCCTCGCCTTCGGAGTTCAAGGCTCGACA
GCGGCCGGATGCTGTGGGTGAGAGGAAGATGTTCGTGTGCCGGGGGTGGG
AGTGTCTTGTTGCCCTGGTGGATGTTGGTGTATAGAGGGTCGGTGCCTTG
CGCTGGTGTTAGCTGCTCTGGTCTGGATTGGAACGACATAGTCGGTTTCT
GGGGAAGGGAACTTTATTTGGAATAAATTGGGGGCGGGCTAGGTGGGCAC
CCTCTAAGGATAGGACGCTTTTGTTTCTTTTATTTTTTGTTCATATGGTG
ATGTTACCATCAACATATTATTGTATGGTAATGTGTCGGTCGAAGGTTTT
GCCCAATCATCCTGCTTCATGACTGTAGCATGTAGAATATTTACTCTATA
TGTCATGGCGGACCCGGTCGAGATTTCTGTTTCCTTTGGAAAAAACTGAC
GACAGATGACATTACAAGATTCAGGACAGGAAACTTGAAAAAGGGAAATA
TAAGACTCGATGAGAAGGGAAATATAAGAACAAAGTGAAACGTAACAGCG
ACCCCCGGGACGGAAAAGGGAAAATATTTTGTTCACCTTTGGACGCAGCA
GCACACCGTGTTGATGTACACATCCCGTGCAGTAGAAAAGCCTCCGATCC
CCCCTTTCCCTCACTCGGCCTTTTCATTTTTTTCGTGAATTTTTCTTCGA
AAAATATATGGTGTCGTTGGCAAAGGCAGTAGTTAAAGGTGGGTGGTTTC
GATGTCCTAAGACCTTTCTTGATGTTGATGTTGACGTATATATTGCCCGC
TGTCTCGTTGCGTCGCCCTGCGTATCCGCTTTCTGATATTGTGTGTTCGG
TAGTTAGTATTTCTTCACCTCCTCACGCCCGTTTCGACCCAGCTGAATAC
TCGCGACAGCAGCTGACTACTTTATCAGCATCATCACCCGGCGATTCGCG
GGTCCCGACCTTCATCGTACGCCGTTTTCCGTGCGCCCTCGCGTGCTCCA
GAACACCAGCCCTTCTGCGGAGTATGCGCGACACCGTTCACCCTCATGGT
TCGGCGACAGCGCTGCCAAGTGTGCGGGGAGAGCGTGTGTGCACAGTGCT
CCATCGACAAGCGCTACGTGGAAGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11246:4808..6035-

>mRNA_H-elongata_contig11246.1014.1 ID=mRNA_H-elongata_contig11246.1014.1|Name=mRNA_H-elongata_contig11246.1014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig11246:4808..6035- (Himanthalia elongata Himel1 dioecious)
CACGATTGTTCCCGTTCCCGTTCCTGCTCCATTGGCGCCCCCCCAAAAAG
TCCTGGACCTGAAGCTCCTTCCGTCGGGGACGTCGCTCACGCTCCGCATG
AAGAAACAGTCGCATATCACGCCCTCGCCTTCGGAGTTCAAGGCTCGACA
GCGGCCGGATGCTGTGGCACGATTGTTCCCGTTCCCGTTCCTGCTCCATT
GGCGCCCCCCCAAAAAGTCCTGGACCTGAAGCTCCTTCCGTCGGGGACGT
CGCTCACGCTCCGCATGAAGAAACAGTCGCATATCACGCCCTCGCCTTCG
GAGTTCAAGGCTCGACAGCGGCCGGATGCTGTGGAACACCAGCCCTTCTG
CGGAGTATGCGCGACACCGTTCACCCTCATGGTTCGGCGACAGCGCTGCC
AAGTGTGCGGGGAGAGCGTGTGTGCACAGTGCTCCATCGACAAGCGCTAC
GTGGAAGGTAAAACACCAGCCCTTCTGCGGAGTATGCGCGACACCGTTCA
CCCTCATGGTTCGGCGACAGCGCTGCCAAGTGTGCGGGGAGAGCGTGTGT
GCACAGTGCTCCATCGACAAGCGCTACGTGGAAGGTAA
back to top