mRNA_H-elongata_contig112449.1013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112449.1013.1
Unique NamemRNA_H-elongata_contig112449.1013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112449.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112449contigH-elongata_contig112449:1605..1878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size255
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112449.1013.1prot_H-elongata_contig112449.1013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112449 1652..1841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.3804545-UTR-H-elongata_contig112449:1604..16511622929646.3804545-UTR-H-elongata_contig112449:1604..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112449 1605..1651 -
1691679104.0891614-UTR-H-elongata_contig112449:1604..16511691679104.0891614-UTR-H-elongata_contig112449:1604..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112449 1605..1651 -
1622929646.448314-UTR-H-elongata_contig112449:1841..18781622929646.448314-UTR-H-elongata_contig112449:1841..1878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112449 1842..1878 -
1691679104.1303852-UTR-H-elongata_contig112449:1841..18781691679104.1303852-UTR-H-elongata_contig112449:1841..1878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112449 1842..1878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.39875-CDS-H-elongata_contig112449:1651..16781622929646.39875-CDS-H-elongata_contig112449:1651..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112449 1652..1678 -
1691679104.1024458-CDS-H-elongata_contig112449:1651..16781691679104.1024458-CDS-H-elongata_contig112449:1651..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112449 1652..1678 -
1622929646.418612-CDS-H-elongata_contig112449:1697..18411622929646.418612-CDS-H-elongata_contig112449:1697..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112449 1698..1841 -
1691679104.1197817-CDS-H-elongata_contig112449:1697..18411691679104.1197817-CDS-H-elongata_contig112449:1697..1841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112449 1698..1841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112449.1013.1

>prot_H-elongata_contig112449.1013.1 ID=prot_H-elongata_contig112449.1013.1|Name=mRNA_H-elongata_contig112449.1013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MADNEQSRRRRQRLPLFISPIQSPLPEIGAEAELEFQCPWPPPRLTFRRL
LNRGGL*
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mRNA from alignment at H-elongata_contig112449:1605..1878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112449.1013.1 ID=mRNA_H-elongata_contig112449.1013.1|Name=mRNA_H-elongata_contig112449.1013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=274bp|location=Sequence derived from alignment at H-elongata_contig112449:1605..1878- (Himanthalia elongata Himel1 dioecious)
GAAGCGTCTTCATGATCGAGACGCTTCTCTGTCTACCATGGCGGACAATG
AGCAGAGCCGTCGCCGTCGCCAGCGCCTACCACTTTTCATATCGCCAATT
CAATCTCCGCTTCCGGAGATTGGTGCAGAAGCGGAGCTCGAGTTTCAGTG
CCCATGGCCTCCGCCTCGTCTGACCTTTCGAGCGGGGATGAGCATTCGAG
CGGTTGCTGAATCGAGGAGGTCTCTGAACGTGAGGCCGAATTTTAAGGCG
GTAAGCTCGAGGAGACGACGCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig112449:1605..1878-

>mRNA_H-elongata_contig112449.1013.1 ID=mRNA_H-elongata_contig112449.1013.1|Name=mRNA_H-elongata_contig112449.1013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig112449:1605..1878- (Himanthalia elongata Himel1 dioecious)
ATGGCGGACAATGAGCAGAGCCGTCGCCGTCGCCAGCGCCTACCACTTTT
CATATCGCCAATTCAATCTCCGCTTCCGGAGATTGGTGCAGAAGCGGAGC
TCGAGTTTCAGTGCCCATGGCCTCCGCCTCGTCTGACCTTTCGAATGGCG
GACAATGAGCAGAGCCGTCGCCGTCGCCAGCGCCTACCACTTTTCATATC
GCCAATTCAATCTCCGCTTCCGGAGATTGGTGCAGAAGCGGAGCTCGAGT
TTCAGTGCCCATGGCCTCCGCCTCGTCTGACCTTTCGACGGTTGCTGAAT
CGAGGAGGTCTCTGACGGTTGCTGAATCGAGGAGGTCTCTGA
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