mRNA_H-elongata_contig112438.1012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112438.1012.1
Unique NamemRNA_H-elongata_contig112438.1012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 64.3 bits (155), Expect = 6.850e-13
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 RMMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            RMMYG GD+E+PLPETVACMQ+LV+ ++ H+T EAC V
Sbjct:    8 RMMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLV 45
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BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-11
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYG GD+E+PLPETV CMQ+LV+ ++ H+T EAC V
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLV 37
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 60.1 bits (144), Expect = 5.540e-11
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYG GD+E+PLPETV CMQ+LV+ ++ H+T EAC V
Sbjct:   32 MMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLV 68
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.810e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACK 111
            MMYGFGDE++PLPETVA MQE+V  +++++TD+ACK
Sbjct:   31 MMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACK 66
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BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A6A5C0T4_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C0T4_NAEFO)

HSP 1 Score: 53.5 bits (127), Expect = 3.140e-7
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 RMMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            +MMYGFGD +NPLPETVA M+ELV  ++  I  EA K+
Sbjct:  196 QMMYGFGDVKNPLPETVALMEELVKEYVHEIVTEATKM 233
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BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A078FRE9_BRANA ((rape) hypothetical protein n=6 Tax=Brassiceae TaxID=981071 RepID=A0A078FRE9_BRANA)

HSP 1 Score: 49.3 bits (116), Expect = 3.000e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   38 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 74
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A078FQ38_BRANA (BnaC05g01350D protein n=2 Tax=Brassica napus TaxID=3708 RepID=A0A078FQ38_BRANA)

HSP 1 Score: 49.3 bits (116), Expect = 3.050e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   39 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 75
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A0D3DIK0_BRAOL (Uncharacterized protein n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3DIK0_BRAOL)

HSP 1 Score: 49.3 bits (116), Expect = 5.090e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   73 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 109
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: R0IHD7_9BRAS (Uncharacterized protein (Fragment) n=2 Tax=Capsella rubella TaxID=81985 RepID=R0IHD7_9BRAS)

HSP 1 Score: 49.3 bits (116), Expect = 5.350e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   79 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 115
[Close]
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A3P6CQ89_BRACM ((field mustard) hypothetical protein n=3 Tax=Brassica TaxID=3705 RepID=A0A3P6CQ89_BRACM)

HSP 1 Score: 49.3 bits (116), Expect = 5.410e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 114
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   78 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QN96_ESV1K6.850e-1368.42EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL2_ECTSI1.330e-1164.86EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Q8QN93_ESV1K5.540e-1164.86EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D7FXB5_ECTSI1.810e-1066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A5C0T4_NAEFO3.140e-760.53Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A078FRE9_BRANA3.000e-651.35(rape) hypothetical protein n=6 Tax=Brassiceae Tax... [more]
A0A078FQ38_BRANA3.050e-651.35BnaC05g01350D protein n=2 Tax=Brassica napus TaxID... [more]
A0A0D3DIK0_BRAOL5.090e-651.35Uncharacterized protein n=6 Tax=Brassica TaxID=370... [more]
R0IHD7_9BRAS5.350e-651.35Uncharacterized protein (Fragment) n=2 Tax=Capsell... [more]
A0A3P6CQ89_BRACM5.410e-651.35(field mustard) hypothetical protein n=3 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112438contigH-elongata_contig112438:231..1095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue8.8e-08
Seed eggNOG ortholog2880.D7FXB5
Preferred nameTAF13
KEGG koko:K00521,ko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5248@1,KOG3901@2759
Ec32 ortholog descriptionEsV-1-193/196 Transcription initiation factor TFIID subunit 13
Ec32 orthologEc-06_004990.1
EC1.16.1.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size114
Cds size111
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112438.1012.1prot_H-elongata_contig112438.1012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112438 231..1092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.28352-CDS-H-elongata_contig112438:230..2781622929646.28352-CDS-H-elongata_contig112438:230..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112438 231..278 -
1691679104.0476167-CDS-H-elongata_contig112438:230..2781691679104.0476167-CDS-H-elongata_contig112438:230..278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112438 231..278 -
1622929646.3116035-CDS-H-elongata_contig112438:1029..10921622929646.3116035-CDS-H-elongata_contig112438:1029..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112438 1030..1092 -
1691679104.0632663-CDS-H-elongata_contig112438:1029..10921691679104.0632663-CDS-H-elongata_contig112438:1029..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112438 1030..1092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.3309076-UTR-H-elongata_contig112438:1092..10951622929646.3309076-UTR-H-elongata_contig112438:1092..1095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112438 1093..1095 -
1691679104.0758374-UTR-H-elongata_contig112438:1092..10951691679104.0758374-UTR-H-elongata_contig112438:1092..1095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112438 1093..1095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112438.1012.1

>prot_H-elongata_contig112438.1012.1 ID=prot_H-elongata_contig112438.1012.1|Name=mRNA_H-elongata_contig112438.1012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV
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mRNA from alignment at H-elongata_contig112438:231..1095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112438.1012.1 ID=mRNA_H-elongata_contig112438.1012.1|Name=mRNA_H-elongata_contig112438.1012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig112438:231..1095- (Himanthalia elongata Himel1 dioecious)
AGGATGATGTACGGATTCGGGGACGAAGAAAACCCCCTGCCAGAGACCGT
TGCATGCATGCAAGAGGTAGAATGCAAGGGTGGTACTGTACCCTCGAGAG
GGCACCCGTCTATCCGCGTCACCCCTTGCCCCCCCCCCCATCGAAAACAA
TGTGCTGCTTCGATAATATACATATTTTAAATGCATCGAGGAAGCAAATC
ATTAGTGGGAAGAGACGAACTGTAGACACGTGCGTCGTACCGGTTTCCGA
AATTGGAGAGCCCGAGTACACAACGCGTTCCATTCCGCGCCTAGTGCTTG
CCGCACCACAAATATGATAGATTGTTTTGGTGTTTTTGAGGAAGGCGCTG
TACATAAGATTGAAGAAATAATGTGCCCAGCGGTAAAGCCTTACCCCTGA
TGCGGAGTTATTCTTGCTTTTCTTCGTTGCGAACATTGATACGTGGTTAT
TGTACATTCACACGTGGATATGGTACACCAATACGTGGGTATAATCTATC
AATACGTGGGTTTAATACAGCCATACGTGGATATTGCACACCCATTTCAA
GACATTGATTGCATGTAAAAACGTAGGAAAAGGAGAGATGTAAAATTAAT
AAGATACTCTCTCCATGATGGTTTTTTTTCAAGGCCCCGGTCGCTGCCGT
TCACGAACGCACTCAGCTGCGGCGATGTTGTGGGCGTAGCATATCACGGC
GAAAGTATCCCCTTCCTAACGCCCTTCCTACCCTTTCCTCTTTTTGATAT
GTATGGGCATTGCGGTGTGTTTTTGGCATGTTTGACAACGGGGTGTAAAT
CTTCCCGTCCGGGGCAGCTGGTGTCCGGGTTTATCCGACACATCACCGAC
GAAGCTTGCAAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig112438:231..1095-

>mRNA_H-elongata_contig112438.1012.1 ID=mRNA_H-elongata_contig112438.1012.1|Name=mRNA_H-elongata_contig112438.1012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig112438:231..1095- (Himanthalia elongata Himel1 dioecious)
ATGATGTACGGATTCGGGGACGAAGAAAACCCCCTGCCAGAGACCGTTGC
ATGCATGCAAGAGATGATGTACGGATTCGGGGACGAAGAAAACCCCCTGC
CAGAGACCGTTGCATGCATGCAAGAGCTGGTGTCCGGGTTTATCCGACAC
ATCACCGACGAAGCTTGCAAAGTGCTGGTGTCCGGGTTTATCCGACACAT
CACCGACGAAGCTTGCAAAGTG
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