prot_H-elongata_contig112438.1012.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112438.1012.1
Unique Nameprot_H-elongata_contig112438.1012.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length37
Homology
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 62.0 bits (149), Expect = 5.400e-12
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYG GD+E+PLPETVACMQ+LV+ ++ H+T EAC V
Sbjct:    9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLV 45          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.810e-11
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYG GD+E+PLPETV CMQ+LV+ ++ H+T EAC V
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLV 37          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 59.7 bits (143), Expect = 7.520e-11
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYG GD+E+PLPETV CMQ+LV+ ++ H+T EAC V
Sbjct:   32 MMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLV 68          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.440e-10
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACK 36
            MMYGFGDE++PLPETVA MQE+V  +++++TD+ACK
Sbjct:   31 MMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACK 66          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A6A5C0T4_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C0T4_NAEFO)

HSP 1 Score: 52.8 bits (125), Expect = 5.690e-7
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGD +NPLPETVA M+ELV  ++  I  EA K+
Sbjct:  197 MMYGFGDVKNPLPETVALMEELVKEYVHEIVTEATKM 233          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A078FRE9_BRANA ((rape) hypothetical protein n=6 Tax=Brassiceae TaxID=981071 RepID=A0A078FRE9_BRANA)

HSP 1 Score: 48.9 bits (115), Expect = 4.040e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   38 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 74          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A078FQ38_BRANA (BnaC05g01350D protein n=2 Tax=Brassica napus TaxID=3708 RepID=A0A078FQ38_BRANA)

HSP 1 Score: 48.9 bits (115), Expect = 4.110e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   39 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 75          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A0D3DIK0_BRAOL (Uncharacterized protein n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3DIK0_BRAOL)

HSP 1 Score: 48.9 bits (115), Expect = 6.820e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   73 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 109          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: R0IHD7_9BRAS (Uncharacterized protein (Fragment) n=2 Tax=Capsella rubella TaxID=81985 RepID=R0IHD7_9BRAS)

HSP 1 Score: 48.9 bits (115), Expect = 7.160e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   79 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 115          
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Match: A0A3P6CQ89_BRACM ((field mustard) hypothetical protein n=3 Tax=Brassica TaxID=3705 RepID=A0A3P6CQ89_BRACM)

HSP 1 Score: 48.9 bits (115), Expect = 7.250e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0
Query:    1 MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV 37
            MMYGFGDE+NPLPETVA ++++V  ++  +T +A ++
Sbjct:   78 MMYGFGDEQNPLPETVALVEDIVVEYVTDLTHKAQEI 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112438.1012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Q8QN96_ESV1K5.400e-1267.57EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL2_ECTSI1.810e-1164.86EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Q8QN93_ESV1K7.520e-1164.86EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D7FXB5_ECTSI2.440e-1066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A5C0T4_NAEFO5.690e-762.16Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A078FRE9_BRANA4.040e-651.35(rape) hypothetical protein n=6 Tax=Brassiceae Tax... [more]
A0A078FQ38_BRANA4.110e-651.35BnaC05g01350D protein n=2 Tax=Brassica napus TaxID... [more]
A0A0D3DIK0_BRAOL6.820e-651.35Uncharacterized protein n=6 Tax=Brassica TaxID=370... [more]
R0IHD7_9BRAS7.160e-651.35Uncharacterized protein (Fragment) n=2 Tax=Capsell... [more]
A0A3P6CQ89_BRACM7.250e-651.35(field mustard) hypothetical protein n=3 Tax=Brass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 1..37
e-value: 2.4E-9
score: 37.1
IPR009072Histone-foldGENE3D1.10.20.10coord: 1..37
e-value: 9.0E-15
score: 56.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112438contigH-elongata_contig112438:231..1092 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112438.1012.1mRNA_H-elongata_contig112438.1012.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112438 231..1095 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112438.1012.1 ID=prot_H-elongata_contig112438.1012.1|Name=mRNA_H-elongata_contig112438.1012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MMYGFGDEENPLPETVACMQELVSGFIRHITDEACKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold