mRNA_H-elongata_contig11240.1009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11240.1009.1
Unique NamemRNA_H-elongata_contig11240.1009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11240.1009.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 4.920e-41
Identity = 110/254 (43.31%), Postives = 134/254 (52.76%), Query Frame = 2 
Query:  140 WLS----ALEGTRRRRLGPHRFSWMLGSAGDANGGENRLPREGNGDNDDEASENADI-------------VDEETTDGRDAATSTPVDARQEEPQRLAEEGDADPRRPPGSDDWDAAWASTKRKMEEDRKRAPAFSGRKQVVATKNADGEYDFVEISADGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVDLATTNQAFAAVFALLAAAFIFEVYVYATGGITNGATRFQGVGQPTTYDGIPLPPAPP 850
            WLS    A+  T   R  PHR    L  +GD N   +  P  GN D+  EA E+                 DE+ T     A +T     Q E +  A    A+  +     DWD AWAST+++ME +++ APAFSGRKQVVATKN DG YDF EISADGS R                              E V+ ATTNQAFA +FA+L A+ IFEVYVY +GGITNG+TRFQ +GQPTTYD +PLP  PP
Sbjct:   39 WLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQV----DWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPP 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11240.1009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU9_ECTSI4.920e-4143.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11240contigH-elongata_contig11240:4838..7949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006320.1
Exons4
Model size1908
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11240.1009.1prot_H-elongata_contig11240.1009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11240 5881..7936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.6024241-UTR-H-elongata_contig11240:4837..51861622929645.6024241-UTR-H-elongata_contig11240:4837..5186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 4838..5186 -
1691679103.760252-UTR-H-elongata_contig11240:4837..51861691679103.760252-UTR-H-elongata_contig11240:4837..5186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 4838..5186 -
1622929645.6184137-UTR-H-elongata_contig11240:5201..58801622929645.6184137-UTR-H-elongata_contig11240:5201..5880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 5202..5880 -
1691679103.7676528-UTR-H-elongata_contig11240:5201..58801691679103.7676528-UTR-H-elongata_contig11240:5201..5880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 5202..5880 -
1622929645.6871588-UTR-H-elongata_contig11240:7936..79491622929645.6871588-UTR-H-elongata_contig11240:7936..7949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 7937..7949 -
1691679103.8077326-UTR-H-elongata_contig11240:7936..79491691679103.8077326-UTR-H-elongata_contig11240:7936..7949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11240 7937..7949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.6329584-CDS-H-elongata_contig11240:5880..59471622929645.6329584-CDS-H-elongata_contig11240:5880..5947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 5881..5947 -
1691679103.7769768-CDS-H-elongata_contig11240:5880..59471691679103.7769768-CDS-H-elongata_contig11240:5880..5947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 5881..5947 -
1622929645.6486778-CDS-H-elongata_contig11240:6412..65281622929645.6486778-CDS-H-elongata_contig11240:6412..6528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 6413..6528 -
1691679103.7855296-CDS-H-elongata_contig11240:6412..65281691679103.7855296-CDS-H-elongata_contig11240:6412..6528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 6413..6528 -
1622929645.6708686-CDS-H-elongata_contig11240:7252..79361622929645.6708686-CDS-H-elongata_contig11240:7252..7936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 7253..7936 -
1691679103.7971644-CDS-H-elongata_contig11240:7252..79361691679103.7971644-CDS-H-elongata_contig11240:7252..7936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11240 7253..7936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11240.1009.1

>prot_H-elongata_contig11240.1009.1 ID=prot_H-elongata_contig11240.1009.1|Name=mRNA_H-elongata_contig11240.1009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MRALVGHADSPAGFQATAFALACAKLAPSSRAPYPPFAAPRAWLSALEGT
RRRRLGPHRFSWMLGSAGDANGGENRLPREGNGDNDDEASENADIVDEET
TDGRDAATSTPVDARQEEPQRLAEEGDADPRRPPGSDDWDAAWASTKRKM
EEDRKRAPAFSGRKQVVATKNADGEYDFVEISADGSRRRRGDGGGGFEFS
PGGPGDADASGRFRDREREVVDLATTNQAFAAVFALLAAAFIFEVYVYAT
GGITNGATRFQGVGQPTTYDGIPLPPAPPPSPQEDLSV*
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mRNA from alignment at H-elongata_contig11240:4838..7949-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11240.1009.1 ID=mRNA_H-elongata_contig11240.1009.1|Name=mRNA_H-elongata_contig11240.1009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3112bp|location=Sequence derived from alignment at H-elongata_contig11240:4838..7949- (Himanthalia elongata Himel1 dioecious)
AGCGTATATCGCCATGAGAGCGCTGGTGGGCCACGCGGACTCCCCCGCGG
GGTTTCAAGCTACCGCGTTTGCCCTGGCGTGTGCGAAGCTTGCCCCCTCG
TCCCGCGCTCCGTACCCACCTTTCGCCGCTCCAAGGGCGTGGTTATCGGC
GCTCGAGGGGACAAGGCGTCGACGCCTCGGACCCCACCGATTCTCCTGGA
TGTTGGGGTCCGCTGGTGACGCCAATGGTGGGGAAAACCGGTTACCGCGA
GAGGGCAACGGCGACAACGACGATGAGGCCTCGGAAAATGCGGACATCGT
CGACGAGGAAACAACTGACGGCAGGGATGCTGCTACTTCTACCCCTGTCG
ATGCGAGGCAAGAGGAGCCGCAGCGGCTCGCGGAGGAGGGCGATGCGGAC
CCGAGGCGCCCACCGGGGAGCGACGACTGGGACGCGGCGTGGGCCAGCAC
GAAGCGTAAAATGGAAGAAGATCGTAAAAGGGCGCCCGCATTCTCCGGGA
GGAAACAGGTGGTCGCGACGAAGAACGCGGACGGAGAGTACGACTTCGTG
GAGATCTCGGCGGATGGATCCCGCAGGCGGCGGGGAGACGGCGGGGGAGG
CTTCGAGTTTTCGCCCGGTGGTCCCGGAGATGCCGATGCAAGCGGGCGGT
TTCGTGACCGAGAGCGGGAAGTCGTTGATCTTGCCACGACCAATCAGGTG
TGCGAGAGGGTAATGCTTGCTTTCTTCCGTGTGTTTTCCGAGTCTGATCG
ATTGCCGTGGAATAATAGCTGTAGTATTGTGACCGATTGCCGTGGCGCAT
GTACTACATATCTCTCACGATTCCTTGGGCCGTTGTCACCATACTTCGGG
TTGCTCGCTTTCTTCTCTTGAACACGCACGCTTGCGAGATTAACGGTGGT
GTTTAACTTTTTGCGTCACCTCGGAACCAAGTCGCAGCCGCACTCGTAGT
CGAAGACGGGTTTCCTAAGATATGGCGGTTTACATATAGTGGAGATAGGA
TGGGTTGGTTGCGAAAGCAGAGACGGAAGGGTTCTATCGAAGATATATTT
CCAGGTACGTGGTCGCCATAGACGTGTTACCCCTCTCAAGCGTCAGTAGC
AATTTAGCACCAGCATACCTTGGTAAACTCGCCGGGGAGAAGCTCGATTC
CTTCCCCCTGCACCCCCCGCACCCCAACGGTCGATCGCCGTTTATTTTGA
ACATTTCTCTTGGTCTCATTTCTCGCCTGGGCAAGCTCGATAGGCAAAAT
CGCGAGATGGCGTAGCGCGTGAAGCGGCTCGGCGTTGGCGCCGTTTCGTC
AGCTCTTCACCTTTTAGGGATTCTACGACACAACGAGAAATAACTGCGGC
ACACTCGCGGGTTGGGTTTTGCTACGACCTTCCCTGGCGTTTCCCGCGAC
CGTGTTCCTCATTGTCGCCAGGCGTTCGCGGCAGTGTTTGCACTACTGGC
GGCAGCATTTATCTTCGAGGTCTACGTGTACGCCACCGGGGGGATCACTA
ACGGGGCCACGCGGTTCCAGGGCGTGGGTCAGCCAACGTGAGCAGCTCTA
TTGCCGTACTCCTGCCCTGAACAACCCCGGGGTTGGAGTTGCACCCAACG
TGGCTTGTTTTGTCGTTTTAACGAATGGGGGAGAATGACCTTGTGGGAGG
TGGTAATCGGCGCGTTGCTTTTCCGTGAGAATCGAACTGGGTCCAGCTAC
GTACCGGTTATTTTCGTTTATTGGTAGGAAACATGGGGCTGGCGATCGGT
ATCGAAATGGAGCTCTGTCCCACGCCTGGCCACACCCCCCCCAAAAAATA
TTTGAAAAATGATTGCAGAGGATGGTCGTGTTGCGAGGTCGCAGCGCCAA
GGCTTCTTCCGGAGGCGCTTCCCTTTAGTGATATTTGCGCACCTCTCCAA
ATATTTAGGCTCGATCCGTCCCTCTTGACCAACGATGTTCGTACCACCCA
CCGCCGCGACCGGACGATGATGTATTTTTCACACCCATAAACTTTATGGC
AGGACCTACGACGGCATTCCGCTTCCGCCGGCACCACCGCCGTCGCCTCA
AGAAGACCTTTCGGTCTAACGTAGAAGTCGTTGAATAAATTTTATTTTGT
AACTGAATCGTTGGCGGCGGGATGGGAATAATGAGAGAGGTGGGGGAGGA
TGAAGAAGCGAATCGTGGGAGAGGGGATGCGATGGAAGAAACGCTTAAGG
GTTTGGTATCATGAGGCTAATGGCAGTTCACTCGTAAAATGTTGTGGGAG
AAAAGCTATTAGGTAAATAGTACCCTGGTACCAGGAAAGTGGCAGTGGAG
TACTCCTACCGGAGTCTTATGAAGACCCAAAAACTTGCGACAGGGTAAAA
AAGGATGAGGGCATATATATATATATATATATATGGTGAAACAACCTCAT
GTGGCTGCAGAGGCTGGTGCAGGTCGCTGTTAAGCGAACCGATCGATGCA
CTACGTGCACAGAACCAAAATATGTGGATATTGAATTGGGCACTTAGATA
GCCAAGAAAAACAGAGAAGAACGGACTGTGTTTGAAGTCCAGGGAACAGG
AAAACATATAAGTAGAAGTAAACAAGTGTGCGACCCTCTTCGGCTAAATT
CGCGAAAACAGCCTAAAGCGAATTTGTAGAGGTCTAGAACTAGGCCTCTG
TCACACTTTACGAGCCATGAGTAGGAGGCCTAGAGCTAGGCCTCGAAGGA
TGGATGGATCCAGCCCCCGTACTACGGGGGGGGCATGGAACATCTCCTGT
ACTTGGACACGAGCTGGATTAGTTTCGCCTCGCAAGGGCATCGAAGGACA
CCTCAAACAAGTTTTCACACATACACACCGACCAGTGTGTAAGTGCGCGT
TACTGTTGTATCACACACCACACTTGCGGAAAACGCCTCCTCGTTGGTGA
AACGCGTCTACACCGTGTACCCTCTCTCTTACAAGACTTGACGCGCTTGC
TGAACTATGTTTCAAAGTAGGCCTTGCGTAGCCAAACCGAGCACCCAAGA
CACGAGCCCCCTTCTATTCATAGAAAAATTGAACGCTACGCCGAGCCGTG
CAGGCATGTCTGCCAGGATTGAATCAAATCGTTGATATTTTGGAAGACGG
CGGGCTGCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig11240:4838..7949-

>mRNA_H-elongata_contig11240.1009.1 ID=mRNA_H-elongata_contig11240.1009.1|Name=mRNA_H-elongata_contig11240.1009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig11240:4838..7949- (Himanthalia elongata Himel1 dioecious)
ATGAGAGCGCTGGTGGGCCACGCGGACTCCCCCGCGGGGTTTCAAGCTAC
CGCGTTTGCCCTGGCGTGTGCGAAGCTTGCCCCCTCGTCCCGCGCTCCGT
ACCCACCTTTCGCCGCTCCAAGGGCGTGGTTATCGGCGCTCGAGGGGACA
AGGCGTCGACGCCTCGGACCCCACCGATTCTCCTGGATGTTGGGGTCCGC
TGGTGACGCCAATGGTGGGGAAAACCGGTTACCGCGAGAGGGCAACGGCG
ACAACGACGATGAGGCCTCGGAAAATGCGGACATCGTCGACGAGGAAACA
ACTGACGGCAGGGATGCTGCTACTTCTACCCCTGTCGATGCGAGGCAAGA
GGAGCCGCAGCGGCTCGCGGAGGAGGGCGATGCGGACCCGAGGCGCCCAC
CGGGGAGCGACGACTGGGACGCGGCGTGGGCCAGCACGAAGCGTAAAATG
GAAGAAGATCGTAAAAGGGCGCCCGCATTCTCCGGGAGGAAACAGGTGGT
CGCGACGAAGAACGCGGACGGAGAGTACGACTTCGTGGAGATCTCGGCGG
ATGGATCCCGCAGGCGGCGGGGAGACGGCGGGGGAGGCTTCGAGTTTTCG
CCCGGTGGTCCCGGAGATGCCGATGCAAGCGGGCGGTTTCGTGACCGAGA
GCGGGAAGTCGTTGATCTTGCCACGACCAATCAGATGAGAGCGCTGGTGG
GCCACGCGGACTCCCCCGCGGGGTTTCAAGCTACCGCGTTTGCCCTGGCG
TGTGCGAAGCTTGCCCCCTCGTCCCGCGCTCCGTACCCACCTTTCGCCGC
TCCAAGGGCGTGGTTATCGGCGCTCGAGGGGACAAGGCGTCGACGCCTCG
GACCCCACCGATTCTCCTGGATGTTGGGGTCCGCTGGTGACGCCAATGGT
GGGGAAAACCGGTTACCGCGAGAGGGCAACGGCGACAACGACGATGAGGC
CTCGGAAAATGCGGACATCGTCGACGAGGAAACAACTGACGGCAGGGATG
CTGCTACTTCTACCCCTGTCGATGCGAGGCAAGAGGAGCCGCAGCGGCTC
GCGGAGGAGGGCGATGCGGACCCGAGGCGCCCACCGGGGAGCGACGACTG
GGACGCGGCGTGGGCCAGCACGAAGCGTAAAATGGAAGAAGATCGTAAAA
GGGCGCCCGCATTCTCCGGGAGGAAACAGGTGGTCGCGACGAAGAACGCG
GACGGAGAGTACGACTTCGTGGAGATCTCGGCGGATGGATCCCGCAGGCG
GCGGGGAGACGGCGGGGGAGGCTTCGAGTTTTCGCCCGGTGGTCCCGGAG
ATGCCGATGCAAGCGGGCGGTTTCGTGACCGAGAGCGGGAAGTCGTTGAT
CTTGCCACGACCAATCAGGCGTTCGCGGCAGTGTTTGCACTACTGGCGGC
AGCATTTATCTTCGAGGTCTACGTGTACGCCACCGGGGGGATCACTAACG
GGGCCACGCGGTTCCAGGGCGTGGGTCAGCCAACGCGTTCGCGGCAGTGT
TTGCACTACTGGCGGCAGCATTTATCTTCGAGGTCTACGTGTACGCCACC
GGGGGGATCACTAACGGGGCCACGCGGTTCCAGGGCGTGGGTCAGCCAAC
GACCTACGACGGCATTCCGCTTCCGCCGGCACCACCGCCGTCGCCTCAAG
AAGACCTTTCGGTCTAAGACCTACGACGGCATTCCGCTTCCGCCGGCACC
ACCGCCGTCGCCTCAAGAAGACCTTTCGGTCTAA
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