mRNA_H-elongata_contig11234.1005.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI) HSP 1 Score: 169 bits (429), Expect = 3.190e-49 Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
TYGMTKACAELLVNDCTRKGFVDGRIARLPTV+VRPGPPN AATGCFSS+PKAVLHG HFISPVSPD+ H CVG+ +AV GLI L++ASE + G RDR +
Sbjct: 198 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAI 297
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A4D9D647_9STRA (Epimerase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.910e-24 Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQVYYSQNLP 324
TYGMTKA EL+VND TRKG+VDGR RLPTVIVRPG N A+TGCFS++ + +L GH ++ P P HP + ++GL+ L +G DR V NLP
Sbjct: 178 TYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSV----NLP 279
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812Z4J5_9DINO (DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Z4J5_9DINO) HSP 1 Score: 102 bits (255), Expect = 3.950e-24 Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
TYGMTKA ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + + LHG + PV+ +PH + L+ L++A
Sbjct: 88 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARMLPHSVTSTRALISNLVILHDA 175
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A437QH10_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT) HSP 1 Score: 103 bits (256), Expect = 4.660e-24 Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGN 288
TTYGMTKA EL++ND TRKGF+DGR ARLPTVI+RPG PN AA+ FS + + L G PV PDV HP +G T V G++ L A +G+
Sbjct: 152 TTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGD 247
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812N7H2_9DINO (DenD protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N7H2_9DINO) HSP 1 Score: 102 bits (255), Expect = 9.300e-24 Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
TYGMTKA ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + + LHG + PV+ +PH + L+ L++A
Sbjct: 164 TYGMTKAVCELLVNDYTRKGFLDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARTLPHSVTSTRALISNLVILHDA 251
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A800A3D9_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A800A3D9_9PROT) HSP 1 Score: 100 bits (248), Expect = 1.590e-23 Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
TTYGMTKA EL++ND TRKGF+DGR ARLPTVI+RPGPPN AA+G S + + L G+ F+ PV +G AV GLI L +A +G DR V
Sbjct: 66 TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGPPNAAASGFASGVFREPLAGNEFVLPVGMGTKMMVLGTRNAVAGLIGLMDADGDALGG-DRMV 165
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A1Q9DKX0_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DKX0_SYMMI) HSP 1 Score: 103 bits (257), Expect = 2.370e-23 Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
TYGMTKA ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + + LHG + PV+ +PH + L+ L++A
Sbjct: 347 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARTLPHSVTSTRALISNLVILHDA 434
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812U013_9DINO (DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812U013_9DINO) HSP 1 Score: 102 bits (255), Expect = 4.630e-23 Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
TYGMTKA ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + + LHG + PV+ +PH + L+ L++A
Sbjct: 88 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARMLPHSVTSTRALISNLVILHDA 175
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A2S6TU17_9PROT (Putative epimerase/dehydratase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TU17_9PROT) HSP 1 Score: 100 bits (248), Expect = 7.410e-23 Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
TTYGMTKA EL++ND TRKGF+DGR ARLPTVI+RPGPPN AA+G S + + L G+ F+ PV +G AV GLI L +A +G DR V
Sbjct: 155 TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGPPNAAASGFASGVFREPLAGNEFVLPVGMGTKMMVLGTRNAVAGLIGLMDADGDALGG-DRMV 254
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A7S4HM38_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM38_9STRA) HSP 1 Score: 102 bits (253), Expect = 8.390e-23 Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNN 264
TTYGMTKAC ELL++D +R+GFVDGR ARLPTV+VR G PN A TGCFS + + L G I P+ PDV H G+ AV L L++
Sbjct: 192 TTYGMTKACGELLLSDYSRRGFVDGRGARLPTVVVRAGRPNAATTGCFSGVVRETLGGIDSILPIGPDVKHAVTGMRNAVDALRTLHD 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11234.1005.1 >prot_H-elongata_contig11234.1005.1 ID=prot_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAback to top mRNA from alignment at H-elongata_contig11234:119..1384+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11234.1005.1 ID=mRNA_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-elongata_contig11234:119..1384+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11234:119..1384+ >mRNA_H-elongata_contig11234.1005.1 ID=mRNA_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig11234:119..1384+ (Himanthalia elongata Himel1 dioecious)back to top |