prot_H-elongata_contig112333.1004.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112333.1004.1
Unique Nameprot_H-elongata_contig112333.1004.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: D8LLE7_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.790e-26
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SPYQDLEKAT+LQECRVFSDSNVVT++P+RCG LITKLLYIL+ GETLSSSETTEV
Sbjct:   51 SPYQDLEKATVLQECRVFSDSNVVTNNPRRCGMLITKLLYILNTGETLSSSETTEV 106          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A6U1MSQ3_9STRA (Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MSQ3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.470e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SP+ DLEKA +LQECR FSDSNVVT HP+RC  LITKLL+ILS G+T SSSETTEV
Sbjct:   38 SPFADLEKAAVLQECRAFSDSNVVTHHPQRCSHLITKLLHILSTGDTFSSSETTEV 93          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A836CC02_9STRA (Coatomer subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC02_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SPY  LEKAT+LQECR F+DSNVVT++PKRC QLITKLL++L+QGET +SSE T+V
Sbjct:   48 SPYHALEKATVLQECRAFNDSNVVTNNPKRCCQLITKLLHLLTQGETFTSSEVTDV 103          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A6S8VPR0_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VPR0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.420e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 120          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A7S3ZYC8_9STRA (Hypothetical protein (Fragment) n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYC8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.420e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   65 SPFSDLEKATVLQECRVFSDSKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 120          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: F0Y6T5_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T5_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 3.320e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SP+ DLEKAT+LQECRVFSDS VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   39 SPFADLEKATVLQECRVFSDSKVVTDSPRKCSQLITKLLHIVTQGDAMSSSEVTEV 94          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: F0YM71_AURAN (Coatomer subunit gamma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM71_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 8.440e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SP+ DLEKAT+LQECRVFSD+ VVT  P++C QLITKLL+I++QG+ +SSSE TEV
Sbjct:   36 SPFADLEKATVLQECRVFSDAKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEV 91          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A4D9D1Q3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Q3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-17
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SPYQDLEKA++LQECRVF D+N+VT  P+ C QLITKLL+ILSQGE L+S ETT V
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTV 109          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: I2CP15_NANGC (Adaptin_N domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CP15_NANGC)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-17
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    7 SPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            SPYQDLEKA++LQECRVF D+N+VT  P+ C QLITKLL+ILSQGE L+S ETT V
Sbjct:   54 SPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTV 109          
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Match: A0A8K1CUF4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUF4_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 2.150e-17
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    1 DEIRTDSPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQGETLSSSETTEV 62
            DE    SP+Q L+KAT+LQE ++FSD+N+VT HPK+C QLITKLL+IL+QGE  +S+ETT+V
Sbjct:   39 DEDDHSSPFQGLDKATVLQETKIFSDANIVTKHPKKCCQLITKLLHILTQGEPFTSTETTDV 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112333.1004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE7_ECTSI7.790e-2687.50Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A6U1MSQ3_9STRA1.470e-1976.79Coatomer subunit gamma n=1 Tax=Fibrocapsa japonica... [more]
A0A836CC02_9STRA1.300e-1873.21Coatomer subunit gamma n=1 Tax=Tribonema minus Tax... [more]
A0A6S8VPR0_9STRA2.420e-1871.43Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3ZYC8_9STRA2.420e-1871.43Hypothetical protein (Fragment) n=4 Tax=Pelagomona... [more]
F0Y6T5_AURAN3.320e-1871.43Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]
F0YM71_AURAN8.440e-1869.64Coatomer subunit gamma n=1 Tax=Aureococcus anophag... [more]
A0A4D9D1Q3_9STRA1.140e-1773.21Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
I2CP15_NANGC1.150e-1773.21Adaptin_N domain-containing protein n=2 Tax=Nannoc... [more]
A0A8K1CUF4_PYTOL2.150e-1762.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 10..63
e-value: 3.3E-9
score: 38.3
IPR017106Coatomer gamma subunitPANTHERPTHR10261COATOMER SUBUNIT GAMMAcoord: 5..62
NoneNo IPR availablePANTHERPTHR10261:SF0COATOMER SUBUNIT GAMMA-2coord: 5..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112333contigH-elongata_contig112333:1523..1714 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112333.1004.1mRNA_H-elongata_contig112333.1004.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112333 1523..1714 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112333.1004.1 ID=prot_H-elongata_contig112333.1004.1|Name=mRNA_H-elongata_contig112333.1004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
DEIRTDSPYQDLEKATLLQECRVFSDSNVVTSHPKRCGQLITKLLYILSQ
GETLSSSETTEVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR017106Coatomer_gsu