mRNA_H-elongata_contig112296.1003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112296.1003.1
Unique NamemRNA_H-elongata_contig112296.1003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112296.1003.1 vs. uniprot
Match: A0A6H5KFT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.700e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 FSGFGEEDGEVHEARVKKLKDSKKWTLVALKDLCTLLGLDKGGTKVRVSDRYPSHNLNP 177
            FSGF ++DG+  +AR+KKL +SKKWT+ AL+DLCTLLGL+KGG K  V DR  S   +P
Sbjct:   87 FSGFPDDDGK--DARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASP 143
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BLAST of mRNA_H-elongata_contig112296.1003.1 vs. uniprot
Match: D7G0W0_ECTSI (Similar to DEK oncogene (DNA binding) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.060e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 FSGFGEEDGEVHEARVKKLKDSKKWTLVALKDLCTLLGLDKGGTKVRVSDRYPSHNLNP 177
            FSGF ++DG+  +AR+KKL +SKKWT+ AL+DLCTLLGL+KGG K  V DR  S   +P
Sbjct:   54 FSGFPDDDGK--DARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASP 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112296.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFT8_9PHAE2.700e-1359.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0W0_ECTSI4.060e-1359.32Similar to DEK oncogene (DNA binding) n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112296contigH-elongata_contig112296:281..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7G0W0
Preferred nameDEK
KEGG koko:K17046
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016032,GO:0016043,GO:0016070,GO:0018130,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097659,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000779,GO:2001020,GO:2001032,GO:2001141
EggNOG free text desc.regulation of double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2266@1,KOG2266@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHigh mobility group and SAP domain protein
Ec32 orthologEc-23_002100.1
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.0689876-CDS-H-elongata_contig112296:280..4631622929645.0689876-CDS-H-elongata_contig112296:280..463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112296 281..463 +
1691679103.5276127-CDS-H-elongata_contig112296:280..4631691679103.5276127-CDS-H-elongata_contig112296:280..463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112296 281..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112296.1003.1prot_H-elongata_contig112296.1003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112296 281..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112296.1003.1

>prot_H-elongata_contig112296.1003.1 ID=prot_H-elongata_contig112296.1003.1|Name=mRNA_H-elongata_contig112296.1003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FSGFGEEDGEVHEARVKKLKDSKKWTLVALKDLCTLLGLDKGGTKVRVSD
RYPSHNLNPK*
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mRNA from alignment at H-elongata_contig112296:281..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112296.1003.1 ID=mRNA_H-elongata_contig112296.1003.1|Name=mRNA_H-elongata_contig112296.1003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig112296:281..463+ (Himanthalia elongata Himel1 dioecious)
TTTTCTGGCTTCGGGGAAGAGGACGGCGAAGTGCACGAGGCACGGGTAAA
GAAGCTCAAGGACTCGAAGAAATGGACGCTTGTCGCTCTCAAGGACCTAT
GCACCCTTCTTGGCCTCGACAAGGGAGGTACCAAGGTGAGAGTGAGTGAT
AGGTACCCTAGCCATAACCTTAACCCTAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112296:281..463+

>mRNA_H-elongata_contig112296.1003.1 ID=mRNA_H-elongata_contig112296.1003.1|Name=mRNA_H-elongata_contig112296.1003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig112296:281..463+ (Himanthalia elongata Himel1 dioecious)
TTTTCTGGCTTCGGGGAAGAGGACGGCGAAGTGCACGAGGCACGGGTAAA
GAAGCTCAAGGACTCGAAGAAATGGACGCTTGTCGCTCTCAAGGACCTAT
GCACCCTTCTTGGCCTCGACAAGGGAGGTACCAAGGTGAGAGTGAGTGAT
AGGTACCCTAGCCATAACCTTAACCCTAAGTGATTTTCTGGCTTCGGGGA
AGAGGACGGCGAAGTGCACGAGGCACGGGTAAAGAAGCTCAAGGACTCGA
AGAAATGGACGCTTGTCGCTCTCAAGGACCTATGCACCCTTCTTGGCCTC
GACAAGGGAGGTACCAAGGTGAGAGTGAGTGATAGGTACCCTAGCCATAA
CCTTAACCCTAAGTGA
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