prot_H-elongata_contig112294.1002.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112294.1002.1
Unique Nameprot_H-elongata_contig112294.1002.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.150e-28
Identity = 55/63 (87.30%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPSFSK 63
            MI+SAY+LLAVVWAEA+LQSRRHWLSARVYKRQLLLGYMIFN+ALYAGQL++YTLLFLPSF++
Sbjct:  107 MIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQ 169          
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: W7TTU2_9STRA (DUF1084 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTU2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.140e-16
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    3 ISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLP 59
            +SAY LLA+VWAEA++QSR HWLS + ++R  LL Y++FNA LY GQLV+YTLLFLP
Sbjct:  115 VSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLP 171          
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A7S1U7L3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-15
Identity = 34/62 (54.84%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    1 MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPSFS 62
            MI++ +TLL +VWAE +L SR HWLS++ ++R+ L+GY++FNA +YA QLV+Y+LLF+P+ S
Sbjct:  118 MIVTTFTLLVLVWAEVFLDSRAHWLSSKTFRRRALIGYLVFNATVYATQLVLYSLLFVPTIS 179          
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.590e-15
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    3 ISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPS 60
            +SAY LLAVVWAEA+L SR HWLSAR Y++  L+ Y++FNAALY  QL++Y  LFLPS
Sbjct:  120 LSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPS 177          
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A7S2SVF8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.660e-9
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPSFSKVS 65
            +++SAY LL + WAE+ + SR HWLS RV++R L + Y++ N  LY  QLV+Y L+FL S    S
Sbjct:  114 IVLSAYMLLGLAWAESMVTSRLHWLSDRVHQRTLRISYLVVNILLYLTQLVLYGLIFLNSTDNTS 178          
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A7S0PTK0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTK0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.440e-9
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYT-LLFLPSFSKV 64
            +++S Y LL +VWAE +L+SR H  S   +KR  L  YM+FNA LYA QLV+YT + F+PS   V
Sbjct:  118 IVVSTYALLTLVWAECFLESRFHTESTLAWKRSGLKCYMVFNALLYATQLVLYTCIFFVPSVKSV 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRE0_ECTSI5.150e-2887.30DUF1084 domain-containing protein n=2 Tax=Ectocarp... [more]
W7TTU2_9STRA1.140e-1666.67DUF1084 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S1U7L3_9STRA1.590e-1554.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z1P3_9STRA1.590e-1565.52DUF1084 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2SVF8_9STRA1.660e-947.69Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S0PTK0_9STRA7.440e-950.77Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..65
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..58
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112294contigH-elongata_contig112294:1274..2057 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112294.1002.1mRNA_H-elongata_contig112294.1002.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112294 1250..2057 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112294.1002.1 ID=prot_H-elongata_contig112294.1002.1|Name=mRNA_H-elongata_contig112294.1002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQL
VMYTLLFLPSFSKVS*
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