mRNA_H-elongata_contig100066.10.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100066.10.1
Unique NamemRNA_H-elongata_contig100066.10.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.850e-25
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = -3 
Query:  136 KMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*-KMRRKMHEVWEQIRLGWYAAPT 417
            K G+ VS  EV +ATRA+ QL HPTKL+E+VE FM G+GW+L WTPPYMP+FQPI  FW     G   + F  K +R M EVW Q+R GWY  PT
Sbjct:  471 KCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQH---GKQYVSFNFKTKRTMAEVWAQVRKGWYGDPT 562
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BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.720e-20
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 
Query:  148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
            G +  +F   T+       G + G  VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  149 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 256
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.180e-20
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -3 
Query:  148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
            VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  199 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 281
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.110e-20
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -3 
Query:  148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
            VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L+F +++RKM EVW QIR GWY
Sbjct:  354 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LKF-ELKRKMREVWVQIRKGWY 436
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.780e-20
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 
Query:  148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
            G +  +F   T+       G + G  VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  446 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 553
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.820e-20
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 
Query:  148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
            G +  +F   T+       G + G  VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  456 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 563
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.280e-20
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -3 
Query:  148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
            VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  370 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 452
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.000e-19
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = -3 
Query:  148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
            VS+ EV  ATR ++ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  157 VSRAEVATATREHIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 239
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.110e-19
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = -3 
Query:  151 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGW 402
            VS+ EV  ATR Y+ L+HP +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GW
Sbjct:  252 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGW 333
[Close]
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.390e-19
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = -3 
Query:  148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
            VS+ EV  ATR Y++L++P +L E+V  FM  KGW L WTPPYMP+FQPI  FW      V  L F +++RKM EVW QIR GWY
Sbjct:  505 VSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRQGWY 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI9.850e-2556.84Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KF39_9PHAE1.720e-2047.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE3.180e-2056.47DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE5.110e-2056.47DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE6.780e-2047.75DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE6.820e-2047.75DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE8.280e-2056.47DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JZ92_9PHAE1.000e-1955.29DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUM1_9PHAE2.110e-1955.95DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LNM6_ECTSI4.390e-1955.29DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100066contigH-elongata_contig100066:811..1349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.4302409-CDS-H-elongata_contig100066:810..12391622929543.4302409-CDS-H-elongata_contig100066:810..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100066 811..1239 +
1691679061.9779332-CDS-H-elongata_contig100066:810..12391691679061.9779332-CDS-H-elongata_contig100066:810..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100066 811..1239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.4467273-UTR-H-elongata_contig100066:1239..13491622929543.4467273-UTR-H-elongata_contig100066:1239..1349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100066 1240..1349 +
1691679062.008905-UTR-H-elongata_contig100066:1239..13491691679062.008905-UTR-H-elongata_contig100066:1239..1349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100066 1240..1349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100066.10.1prot_H-elongata_contig100066.10.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100066 811..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100066.10.1

>prot_H-elongata_contig100066.10.1 ID=prot_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
SGNGGNDSGNGGNDSGNGGDDSGNGGNDSGNGGDDSGNGGDDSGNGGSSV
PTQANLFPDLVHLSPHFSKLKLTYALPCSLPKLPDRLERRHVRGCPSQLP
SLTLHERFHLLNEFGRVVKLQVRPSSDHDLLFAYTLSHLPPR*
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mRNA from alignment at H-elongata_contig100066:811..1349+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100066.10.1 ID=mRNA_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig100066:811..1349+ (Himanthalia elongata Himel1 dioecious)
AGCGGCAATGGTGGGAACGATAGCGGCAATGGTGGGAACGATAGCGGCAA
TGGTGGGGACGATAGCGGCAATGGTGGGAACGATAGCGGCAATGGTGGGG
ACGATAGCGGCAATGGTGGGGACGATAGCGGCAATGGTGGGAGCAGCGTA
CCAACCCAGGCGAATCTGTTCCCAGACCTCGTGCATCTTTCGCCGCATTT
TTCAAAATTGAAGCTGACATACGCCTTACCATGCTCTCTACCAAAACTAC
CCGATCGGCTGGAACGTCGGCATGTACGGGGGTGTCCAAGTCAACTCCCA
TCCCTTACCCTACATGAACGCTTCCACCTGCTCAACGAGTTTGGTAGGGT
GGTGAAGCTGCAAGTACGCCCGAGTAGCGATCACGACCTCCTCTTTGCTT
ACACACTCTCCCATCTTCCACCCCGTTGACCTCTCCCCGTCCATGTCCGT
TGACCTCGAGAAATGCGTCGTGATCCTCCCAGTTATGGCAAACCGCGGTC
ACTTTTTTTCTCTCCCCATCCTAAGGGTGGAGGCCACCT
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Coding sequence (CDS) from alignment at H-elongata_contig100066:811..1349+

>mRNA_H-elongata_contig100066.10.1 ID=mRNA_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig100066:811..1349+ (Himanthalia elongata Himel1 dioecious)
AGCGGCAATGGTGGGAACGATAGCGGCAATGGTGGGAACGATAGCGGCAA
TGGTGGGGACGATAGCGGCAATGGTGGGAACGATAGCGGCAATGGTGGGG
ACGATAGCGGCAATGGTGGGGACGATAGCGGCAATGGTGGGAGCAGCGTA
CCAACCCAGGCGAATCTGTTCCCAGACCTCGTGCATCTTTCGCCGCATTT
TTCAAAATTGAAGCTGACATACGCCTTACCATGCTCTCTACCAAAACTAC
CCGATCGGCTGGAACGTCGGCATGTACGGGGGTGTCCAAGTCAACTCCCA
TCCCTTACCCTACATGAACGCTTCCACCTGCTCAACGAGTTTGGTAGGGT
GGTGAAGCTGCAAGTACGCCCGAGTAGCGATCACGACCTCCTCTTTGCTT
ACACACTCTCCCATCTTCCACCCCGTTGAAGCGGCAATGGTGGGAACGAT
AGCGGCAATGGTGGGAACGATAGCGGCAATGGTGGGGACGATAGCGGCAA
TGGTGGGAACGATAGCGGCAATGGTGGGGACGATAGCGGCAATGGTGGGG
ACGATAGCGGCAATGGTGGGAGCAGCGTACCAACCCAGGCGAATCTGTTC
CCAGACCTCGTGCATCTTTCGCCGCATTTTTCAAAATTGAAGCTGACATA
CGCCTTACCATGCTCTCTACCAAAACTACCCGATCGGCTGGAACGTCGGC
ATGTACGGGGGTGTCCAAGTCAACTCCCATCCCTTACCCTACATGAACGC
TTCCACCTGCTCAACGAGTTTGGTAGGGTGGTGAAGCTGCAAGTACGCCC
GAGTAGCGATCACGACCTCCTCTTTGCTTACACACTCTCCCATCTTCCAC
CCCGTTGA
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