mRNA_H-elongata_contig11224.996.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: D7FXA4_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI) HSP 1 Score: 199 bits (506), Expect = 7.080e-63 Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 13 RASRPSRKRESKQVWSQLRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHFSICRRSGPRDANGHKKIGPFIPLIPRDGYERVSMRSGDCRTSSPCRFAFAGGRSKTEHYHCRSPLCEYASKT 378
R RPSRK+ K VWSQLRKACDRCTSKKV+CDG+EGCFQC R G TCHFSICRRSGPRD+NGHK G P+IPRDGYE+V+ R G CR SS CRF A G+SKTEHYHCR+P CEYASKT
Sbjct: 61 RPRRPSRKKTKKPVWSQLRKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSGPRDSNGHK-TGTIGPIIPRDGYEKVTGRRGSCRISSQCRFVSADGQSKTEHYHCRAPGCEYASKT 181
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: A0A6H5JPG2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG2_9PHAE) HSP 1 Score: 129 bits (324), Expect = 3.150e-32 Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 1 MAAVRASRPSRKRESKQ-VWSQLRKACDRCTSKKVKCDGQ------EGCFQCKRAGTTCHFSICRRSGPRDANGHKKIGPFIPLIPRDGYERVSMRSGDCRTSSPCRFAFAGGRSKTEHYHCRSPLCEYASKT 378
+A + RPS +++SK VWSQ RKACDRCT KKV+CDG + C CKRAG C F ICRRSGPRDA+GHK + ++ R+ +E+V+ R G CRT + CRF G EH+HCR C +A KT
Sbjct: 747 VATAASGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACLFGICRRSGPRDAHGHKTAAAGV-IMKRNDFEKVTERLGQCRTKT-CRFVNKDGSFWREHFHCRVGDCSFAGKT 877
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: D7G066_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G066_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.180e-31 Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 1
Query: 1 MAAVRASRPSRKRESKQ-VWSQLRKACDRCTSKKVKCDGQ------EGCFQCKRAGTTCHFSICRRSGPRDANGHKKIGPFIPLIPRDGYERVSMRSGDCRTSSPCRFAFAGGRSKTEHYHCRSPLCEYASKT 378
+A + RPS +++SK VWSQ RKACDRCT KKV+CDG + C CKRAG C F ICRRSGPRD +GHK + ++ R+ +E+V+ R G CRT + CRF G EH+HCR C +A KT
Sbjct: 498 VATAASGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACIFGICRRSGPRDEHGHKTAAAGV-IMKRNDFEKVTERLGQCRTKT-CRFVNKDGSFWREHFHCRVGDCSFAGKT 628
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: K8YU74_NANGC (Tpa: zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC) HSP 1 Score: 62.8 bits (151), Expect = 6.320e-9 Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 64 LRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHFSICRRSGPR---DANGHKKIGPFIP---LIPRDGYERVSMRSGDCRTSSPCRFAFAGGR 321
LR++CDRCTSKK++CDG C C R G CH+S RR+GP+ A+ H ++ LIP +R S SG R S A G+
Sbjct: 12 LRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSN-DRPSSASGSERASRSASTAIDDGQ 102
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: A0A6H5JRN3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN3_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 5.720e-8 Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 40 ESKQVWSQLRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHFSICRRSGP 186
E+++ ++R+ACD CT KKVKCDG C QC+R C FS C RSGP
Sbjct: 151 EARKARKKIRRACDYCTQKKVKCDGTPPCRQCQRRQIECTFSPCARSGP 199
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 7.490e-8 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 64 LRKACDRCTSKKVKCDGQEG-CFQCKRAGTTCHFSICRRSGPRDANGHKKIGPFIP 228
LR +CDRCT +K+KCDG+EG C +C R CH+S+ +SGP+ + +K P P
Sbjct: 421 LRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKSSPTPP 476
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: A0A1G4JU79_9SACH (LANO_0E06942g1_1 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4JU79_9SACH) HSP 1 Score: 58.9 bits (141), Expect = 1.440e-7 Identity = 33/108 (30.56%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 40 ESKQVWSQLRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHFSI---CRRSGPRDANGHKKIGPFIPLIPRDGYERVSMRSGDCRTSSPCRFAFAGGRS-KTEHYHCRS 351
+ +Q ++ KACD C SKKVKCDG+E CF C ++ TC ++ RR P + K + + R + +R G RT + + G S ++H+ S
Sbjct: 2 DDEQQRKRVSKACDACRSKKVKCDGEEPCFNCTKSSGTCTYARVVKARRKPPTRVSNRKILADLSDRLSRLEDVLIQLRDGPLRTETVAIYHNGGSSSPNSDHFQSGS 109
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 6.710e-7 Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 73 ACDRCTSKKVKCDGQEG-CFQCKRAGTTCHFSICRRSGPRDANGHKKIGPFIP 228
+CDRCT +K+KCDG+EG C +C R CH+S+ +SGP+ + +K P P
Sbjct: 474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRKSSPRSP 526
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: UPI001874EBB5 (uncharacterized protein n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI001874EBB5) HSP 1 Score: 54.3 bits (129), Expect = 5.570e-6 Identity = 22/67 (32.84%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 58 SQLRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHF-SICRRSGPRDANGHKKIGPFIPLIPRDGYER 255
S++R+ACDRC S+K++CDG+ C +C+ C F ++ +++GP+ +K+ +P Y+R
Sbjct: 13 SKVRQACDRCHSRKIRCDGRRPCIKCQETEAECTFYAVPKKTGPKGPRHTRKLHHRQQPVPSSSYQR 79
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Match: A0A4P9ZTU0_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZTU0_9FUNG) HSP 1 Score: 52.8 bits (125), Expect = 1.870e-5 Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1
Query: 64 LRKACDRCTSKKVKCDGQEGCFQCKRAGTTCHFSICRRS 180
LR+ACDRCT KK+KCD Q C C R T CH+S +S
Sbjct: 9 LRRACDRCTEKKIKCDNQRPCAGCIRKNTPCHYSPAYKS 47 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11224.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11224.996.1 >prot_H-elongata_contig11224.996.1 ID=prot_H-elongata_contig11224.996.1|Name=mRNA_H-elongata_contig11224.996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MAAVRASRPSRKRESKQVWSQLRKACDRCTSKKVKCDGQEGCFQCKRAGTback to top mRNA from alignment at H-elongata_contig11224:4617..7851+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11224.996.1 ID=mRNA_H-elongata_contig11224.996.1|Name=mRNA_H-elongata_contig11224.996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3235bp|location=Sequence derived from alignment at H-elongata_contig11224:4617..7851+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11224:4617..7851+ >mRNA_H-elongata_contig11224.996.1 ID=mRNA_H-elongata_contig11224.996.1|Name=mRNA_H-elongata_contig11224.996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig11224:4617..7851+ (Himanthalia elongata Himel1 dioecious)back to top |