mRNA_H-elongata_contig101102.100.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101102.100.1
Unique NamemRNA_H-elongata_contig101102.100.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Match: A0A6H5L8T9_9PHAE (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8T9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.880e-17
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 GQKISMCGMLSTEFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSGSDGPKYPDLYGPVWVSVAL 222
            G KISMCG+LS ++Y+PYFDV+T+EVK +L QA WP+R+T  FL      EG S        DLYGPVWV   L
Sbjct:   92 GPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFL-----GEGDSSK-----VDLYGPVWVPATL 155
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BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Match: G0R3I1_ICHMG (Protein YIPF n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R3I1_ICHMG)

HSP 1 Score: 54.7 bits (130), Expect = 5.410e-7
Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:    4 QKISMCGMLSTEFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSGSDGPKYPDLYGPVWVSVAL 222
            Q++ +CG L  E+Y+PYF++ +NE+K R+     P++  P FL+                PDL+GP W+   L
Sbjct:   57 QQLGICGFLQLEYYQPYFNITSNEIKQRVKSCFLPIK--PDFLNIIKQK-----------PDLWGPFWILTTL 116
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BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Match: A0A654HJ50_9CEST (Protein YIPF n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HJ50_9CEST)

HSP 1 Score: 50.4 bits (119), Expect = 2.060e-5
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 1 
Query:   37 EFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSGSDGPKYPDLYGPVWVSVAL 222
            +FY+ YFDV+TN+V  RL  + WP  +     ++               PDLYGP W++V L
Sbjct:   40 DFYKSYFDVDTNQVLKRLCSSVWPFSKECSLYNSLQPT-----------PDLYGPFWITVTL 90
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BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Match: A0A7M3RM32_SPIER (Protein YIPF n=2 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RM32_SPIER)

HSP 1 Score: 50.4 bits (119), Expect = 2.070e-5
Identity = 24/62 (38.71%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:   37 EFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSGSDGPKYPDLYGPVWVSVAL 222
            +FY+ YFDV+TN+V  RL  + WP  +    L++S              PDLYGP W++V L
Sbjct:   45 DFYKSYFDVDTNQVLKRLCSSVWPFSKE-CSLYSSLQPT----------PDLYGPFWITVTL 95
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BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Match: A0A8J2SR10_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SR10_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.750e-5
Identity = 28/68 (41.18%), Postives = 32/68 (47.06%), Query Frame = 1 
Query:   19 CGMLSTEFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSGSDGPKYPDLYGPVWVSVAL 222
            C  LS  +YRPYFDV+T+EV ARL        R  LF           G      PD YGP WV+  L
Sbjct:   29 CACLSVAYYRPYFDVDTDEVAARL--------RAALFFCNEPFGATLRGK-----PDAYGPWWVATTL 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101102.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L8T9_9PHAE3.880e-1754.05Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
G0R3I1_ICHMG5.410e-732.88Protein YIPF n=1 Tax=Ichthyophthirius multifiliis ... [more]
A0A654HJ50_9CEST2.060e-535.48Protein YIPF n=1 Tax=Sparganum proliferum TaxID=64... [more]
A0A7M3RM32_SPIER2.070e-538.71Protein YIPF n=2 Tax=Spirometra erinaceieuropaei T... [more]
A0A8J2SR10_9STRA5.750e-541.18Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101102contigH-elongata_contig101102:2034..2261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue6.6e-12
Seed eggNOG ortholog2880.D7FQK8
Preferred nameYIPF3
KEGG koko:K00688,ko:K15149
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG3114@1,KOG3114@2759
EC2.4.1.1
COG Functional cat.S
CAZyGT35
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYip1 domain
Ec32 orthologEc-01_009070.1
Exons1
Model size228
Cds size213
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.792105-UTR-H-elongata_contig101102:2033..20481622929551.792105-UTR-H-elongata_contig101102:2033..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101102 2034..2048 +
1691679066.264128-UTR-H-elongata_contig101102:2033..20481691679066.264128-UTR-H-elongata_contig101102:2033..2048Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101102 2034..2048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.8078916-CDS-H-elongata_contig101102:2048..22611622929551.8078916-CDS-H-elongata_contig101102:2048..2261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101102 2049..2261 +
1691679066.274481-CDS-H-elongata_contig101102:2048..22611691679066.274481-CDS-H-elongata_contig101102:2048..2261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101102 2049..2261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101102.100.1prot_H-elongata_contig101102.100.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101102 2049..2261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101102.100.1

>prot_H-elongata_contig101102.100.1 ID=prot_H-elongata_contig101102.100.1|Name=mRNA_H-elongata_contig101102.100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MCGMLSTEFYRPYFDVNTNEVKARLSQAAWPLRRTPLFLHTSNDDEGKSG
SDGPKYPDLYGPVWVSVALF*
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mRNA from alignment at H-elongata_contig101102:2034..2261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101102.100.1 ID=mRNA_H-elongata_contig101102.100.1|Name=mRNA_H-elongata_contig101102.100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig101102:2034..2261+ (Himanthalia elongata Himel1 dioecious)
GGGCAGAAGATAAGCATGTGTGGCATGCTCTCGACGGAGTTCTACAGGCC
CTACTTTGACGTCAACACCAACGAGGTCAAGGCGCGTCTAAGCCAGGCGG
CTTGGCCGCTGAGGCGGACCCCACTTTTCCTGCACACCAGCAACGACGAT
GAAGGGAAGTCGGGGAGCGACGGGCCTAAGTATCCGGACTTGTACGGACC
TGTTTGGGTAAGTGTAGCACTCTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig101102:2034..2261+

>mRNA_H-elongata_contig101102.100.1 ID=mRNA_H-elongata_contig101102.100.1|Name=mRNA_H-elongata_contig101102.100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig101102:2034..2261+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGGCATGCTCTCGACGGAGTTCTACAGGCCCTACTTTGACGTCAA
CACCAACGAGGTCAAGGCGCGTCTAAGCCAGGCGGCTTGGCCGCTGAGGC
GGACCCCACTTTTCCTGCACACCAGCAACGACGATGAAGGGAAGTCGGGG
AGCGACGGGCCTAAGTATCCGGACTTGTACGGACCTGTTTGGGTAAGTGT
AGCACTCTTTTAAATGTGTGGCATGCTCTCGACGGAGTTCTACAGGCCCT
ACTTTGACGTCAACACCAACGAGGTCAAGGCGCGTCTAAGCCAGGCGGCT
TGGCCGCTGAGGCGGACCCCACTTTTCCTGCACACCAGCAACGACGATGA
AGGGAAGTCGGGGAGCGACGGGCCTAAGTATCCGGACTTGTACGGACCTG
TTTGGGTAAGTGTAGCACTCTTTTAA
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