mRNA_H-elongata_contig11223.995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11223.995.1
Unique NamemRNA_H-elongata_contig11223.995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11223.995.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.050e-36
Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:   25 EQETKETAMRDMPSPPGYRRMKIPDKSFTRSIVYDHGVRFEQDTANPDIKKQLWFCACSKSCRESSAKGRGGISCQALQTGNVTRHLK-IHGIESDKTKKAKPTKATHGAKVSEAKKTVMDSKDLGRLMML 414
            E +TK TAMRDMP+P GYRR  +P  S TRSIV+DHGV FEQD A PD KK+ W+C  S  CRE S  G+  I+CQ   TGN TRHL+  HGI S KT  AK T+ T  A VS+ K+ VM S D GR+M+L
Sbjct:   41 EADTKATAMRDMPTPVGYRRSTLPPPSGTRSIVFDHGVSFEQDCARPDPKKKRWYCMGSDRCRELSMAGKTWINCQEKGTGNATRHLRDAHGIVSKKTDTAKKTRGTRTANVSKHKEAVMKSSDPGRVMLL 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11223.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.050e-3657.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11223contigH-elongata_contig11223:6142..8251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size416
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11223.995.1prot_H-elongata_contig11223.995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11223 6143..8251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.1045463-CDS-H-elongata_contig11223:6142..62611622929644.1045463-CDS-H-elongata_contig11223:6142..6261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 6143..6261 -
1691679103.3119526-CDS-H-elongata_contig11223:6142..62611691679103.3119526-CDS-H-elongata_contig11223:6142..6261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 6143..6261 -
1622929644.120937-CDS-H-elongata_contig11223:7663..79281622929644.120937-CDS-H-elongata_contig11223:7663..7928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 7664..7928 -
1691679103.3198426-CDS-H-elongata_contig11223:7663..79281691679103.3198426-CDS-H-elongata_contig11223:7663..7928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 7664..7928 -
1622929644.1362221-CDS-H-elongata_contig11223:8221..82511622929644.1362221-CDS-H-elongata_contig11223:8221..8251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 8222..8251 -
1691679103.327499-CDS-H-elongata_contig11223:8221..82511691679103.327499-CDS-H-elongata_contig11223:8221..8251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11223 8222..8251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11223.995.1

>prot_H-elongata_contig11223.995.1 ID=prot_H-elongata_contig11223.995.1|Name=mRNA_H-elongata_contig11223.995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
EEQGQSIPEQETKETAMRDMPSPPGYRRMKIPDKSFTRSIVYDHGVRFEQ
DTANPDIKKQLWFCACSKSCRESSAKGRGGISCQALQTGNVTRHLKIHGI
ESDKTKKAKPTKATHGAKVSEAKKTVMDSKDLGRLMML
back to top

mRNA from alignment at H-elongata_contig11223:6142..8251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11223.995.1 ID=mRNA_H-elongata_contig11223.995.1|Name=mRNA_H-elongata_contig11223.995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2110bp|location=Sequence derived from alignment at H-elongata_contig11223:6142..8251- (Himanthalia elongata Himel1 dioecious)
GAGGAGCAAGGCCAGTCCATTCCGGAGCAGGTGCATCACACTGAGTTTCC
GCTCTACCTTGACATGGTAACGGTTCATGTAATGGTTATTTTGCTGTAGA
AATCAGCAATTATCATGTGTGACTCTTGACGTCATTGCTCCTCGGTGTTT
GTTCATGTTATGACCAACAGCGGCAATCTACTCAAAGTGTTGTGCACGAA
CATACAAACACGGACGCAAGTATGCACGTATGTATATCTGAACATATATA
TGCCTTTGCGCGTCTTGTCGTGTACGCACATCCACTGAAAAAGCTTTTCA
CTATTGCTCACTCTCACCAACAGGAGACGAAGGAAACGGCCATGCGCGAC
ATGCCCTCACCGCCCGGGTACCGGCGGATGAAGATACCCGACAAATCATT
TACGCGGTCGATTGTGTACGATCACGGCGTGCGCTTCGAGCAAGATACCG
CCAACCCGGATATCAAGAAGCAATTGTGGTTCTGTGCATGCTCGAAGAGC
TGCCGAGAGTCATCGGCGAAAGGCAGGGGCGGCATTAGCTGCCAGGCGTT
GCAGACAGGCAACGTCACTCGTCATCTCAAAATCCACGGTGAGTGTGCAG
GAGCAAACCAATACCGAGGTAGCTAGCCGTGCGACCTTGGAGAGATGTCA
ACGTTAACGTTCAGCTCCCCGATCTTGTCACACAGCTTTTACATTTTTCC
ATGTTTCTGTTGTTAGGATGAAAGTTCTTTGGTTTTGCTCGCGCGCACAT
GTACAAAGATGTGTCTTCCGAAAAACCATGAAAAAAGATCGAAACAATAC
AAATAAAAACAATGAAAGAATAATATTCGTTCCAAGACCAAGGGTTCATC
AAGCTGCATTTTTATTAAAAAAAAACTTGAACTCATTCTAACCCTCCGAA
TATCCACACCTTCTTAGCGCGGTGAGAGGTGCAGTCCAGGGGATCAACTA
TCGTCAGGTTCGAATATGTACATACTACCTTTGAGCACAAAATCGTAACA
CGTGATAGATCGTGTTCCCCAATAGTAAGTTCATCGGGTCAACGGAATAA
TGTCAGGGATGATATCCCATTATTATCCCGTACACTTACCGTAACATTAT
TCATCATGACGTCATGTGGGGACTATGACGCCAAACCAAACCAAAGCCTA
GAGAGTGGACAGTATAAGAAGAGGGGGTGCGGGAGAGAGAGAAAAGGGGG
GAAATAAGTAACCGCATGAGCTGTGGGATACATTGATCAGTCTACATAGA
AGCTATGGAGATATTTAGTTAGTATAGTTTTAGAGGGTATAGGCAGGTTC
AGCAAATGGTTGCATTGTACACACTATATGATTCCTTTCTGGAAGCGTAT
AGCCTAACCTAGAGGCGATTTTACACTGATGTATCATGGAAGCGGGTGGG
ATACCTATACTTCTACTCCTACTGCACTACTTGCAGTTATTTTCCCACAA
AAGTACTCCGGGTATGCTCTACAGTACTTTATTTTTATTTTTCAAGGGCG
GGTGGTATACTCGTATACTTTTGCAGTACCGTACTTCAACTTTTTCCTCA
TACTGTACTATATAGAACAGGGTGGTATGCTGCAACTATTTTTGAAAGTA
TCTGTTATGCTGCATCTTTTTTATGAAGCACGGGTGGTATATATATATTA
TTTTATAGTAGATAGTACGTGCACTGTATTTATTTTTTATTTTCTTGGGT
GTATATTATTTTTATTTAAAAGACTTTAGGCTCATTCTCACTCTCCGAAC
ATCCACACCTTCATGCACCATAGGTGCATATGTTTATGTGCGTCGTCCCA
TTCATTTGGATTCAGCTTTTTACGCATCAACCGAGGTCACACAGGAGTTT
TATTTTTGTTTTGTTTTCCACCTTCTTTCTGCGATGCTTGCCTTTTTCTT
TTTTTCTTCTTCGTTTCTTTGTTGATATTTCAATCGCGCTGTCCCCTGTG
CTTTCTGTCGCTACGCACATTTTCTGCATTTTTGTGTCAGGTATCGAGTC
CGACAAAACGAAAAAGGCTAAACCAACAAAAGCTACGCACGGCGCCAAGG
TCAGCGAGGCGAAGAAGACGGTGATGGATAGCAAGGACCTCGGCCGGCTC
ATGATGCTGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11223:6142..8251-

>mRNA_H-elongata_contig11223.995.1 ID=mRNA_H-elongata_contig11223.995.1|Name=mRNA_H-elongata_contig11223.995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig11223:6142..8251- (Himanthalia elongata Himel1 dioecious)
GAGGAGCAAGGCCAGTCCATTCCGGAGCAGGAGGAGCAAGGCCAGTCCAT
TCCGGAGCAGGAGACGAAGGAAACGGCCATGCGCGACATGCCCTCACCGC
CCGGGTACCGGCGGATGAAGATACCCGACAAATCATTTACGCGGTCGATT
GTGTACGATCACGGCGTGCGCTTCGAGCAAGATACCGCCAACCCGGATAT
CAAGAAGCAATTGTGGTTCTGTGCATGCTCGAAGAGCTGCCGAGAGTCAT
CGGCGAAAGGCAGGGGCGGCATTAGCTGCCAGGCGTTGCAGACAGGCAAC
GTCACTCGTCATCTCAAAATCCACGGAGACGAAGGAAACGGCCATGCGCG
ACATGCCCTCACCGCCCGGGTACCGGCGGATGAAGATACCCGACAAATCA
TTTACGCGGTCGATTGTGTACGATCACGGCGTGCGCTTCGAGCAAGATAC
CGCCAACCCGGATATCAAGAAGCAATTGTGGTTCTGTGCATGCTCGAAGA
GCTGCCGAGAGTCATCGGCGAAAGGCAGGGGCGGCATTAGCTGCCAGGCG
TTGCAGACAGGCAACGTCACTCGTCATCTCAAAATCCACGGTATCGAGTC
CGACAAAACGAAAAAGGCTAAACCAACAAAAGCTACGCACGGCGCCAAGG
TCAGCGAGGCGAAGAAGACGGTGATGGATAGCAAGGACCTCGGCCGGCTC
ATGATGCTGGTATCGAGTCCGACAAAACGAAAAAGGCTAAACCAACAAAA
GCTACGCACGGCGCCAAGGTCAGCGAGGCGAAGAAGACGGTGATGGATAG
CAAGGACCTCGGCCGGCTCATGATGCTG
back to top