mRNA_H-elongata_contig112218.993.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112218.993.1
Unique NamemRNA_H-elongata_contig112218.993.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112218.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112218contigH-elongata_contig112218:883..1656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size774
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112218.993.1prot_H-elongata_contig112218.993.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112218 1017..1412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.9177985-UTR-H-elongata_contig112218:882..10161622929643.9177985-UTR-H-elongata_contig112218:882..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112218 883..1016 +
1691679103.2889547-UTR-H-elongata_contig112218:882..10161691679103.2889547-UTR-H-elongata_contig112218:882..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112218 883..1016 +
1622929644.0470335-UTR-H-elongata_contig112218:1412..16561622929644.0470335-UTR-H-elongata_contig112218:1412..1656Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112218 1413..1656 +
1691679103.3042922-UTR-H-elongata_contig112218:1412..16561691679103.3042922-UTR-H-elongata_contig112218:1412..1656Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112218 1413..1656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.0320833-CDS-H-elongata_contig112218:1016..14121622929644.0320833-CDS-H-elongata_contig112218:1016..1412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112218 1017..1412 +
1691679103.296515-CDS-H-elongata_contig112218:1016..14121691679103.296515-CDS-H-elongata_contig112218:1016..1412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112218 1017..1412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112218.993.1

>prot_H-elongata_contig112218.993.1 ID=prot_H-elongata_contig112218.993.1|Name=mRNA_H-elongata_contig112218.993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MPRALSATSHCCGRPSLIEQGSHHHYRRRCHRLSFRRSPSLIAQQNHRRY
TWAMPPSGGLPLDWRAEASASWMRVFSHTRPSTSCRRSRRRFTYSLTDTS
MLHHTTRCDRLVRRGACASAAQLSFLHRSLR*
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mRNA from alignment at H-elongata_contig112218:883..1656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112218.993.1 ID=mRNA_H-elongata_contig112218.993.1|Name=mRNA_H-elongata_contig112218.993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig112218:883..1656+ (Himanthalia elongata Himel1 dioecious)
GGCCGCCTGGCTGTCTCCGGGAGCACCACCACCACTTCGTCAAGAATGGA
GCCTTCCGGCTCTCTTTCCAGTACCTTCGGCAGGGTCTTGCACCTCCCGT
CCGCGACAGTCCTTCGCGACGGAGTACGCTGGTTATGCCACGAGCCTTAT
CTGCCACCTCTCATTGTTGTGGGCGTCCCTCCCTGATAGAACAGGGGTCG
CACCACCATTATCGCCGGCGTTGCCATCGCCTAAGCTTTCGACGGTCTCC
GAGCCTTATTGCTCAGCAGAACCACCGCCGCTATACGTGGGCAATGCCCC
CCTCTGGAGGGCTTCCACTCGACTGGCGGGCGGAGGCCTCAGCCTCCTGG
ATGCGCGTCTTCTCTCATACGCGTCCATCCACTTCGTGCCGTCGCTCTCG
GCGGCGATTCACTTATAGCCTGACTGACACGAGCATGCTCCATCACACCA
CACGGTGCGACCGTCTCGTGCGGCGAGGTGCGTGCGCCAGCGCCGCCCAA
CTTAGCTTTCTCCACCGATCTCTGCGGTGAGCCACCGGCAGCGTGTCCAC
CGCCCGGCTTCTTGTCCCGGCCGCTCCTCTGGGCGAAGTGCCCACGGAGT
TCTACTCGGCTGCACAGCCCTGTCTCTCTCTCTCCGCCTACTTCATCAGC
GAAGTGTGCACGGGAAGAGTCTCCCCTCCCCGCTCCACCGCGGTCCGTTG
CGGTAGAGTGCACGCGGGATCCCCGCGCGACTTCTCGTGCATCACCACTG
ACGGTGGTGACTTGTGCCCAGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig112218:883..1656+

>mRNA_H-elongata_contig112218.993.1 ID=mRNA_H-elongata_contig112218.993.1|Name=mRNA_H-elongata_contig112218.993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig112218:883..1656+ (Himanthalia elongata Himel1 dioecious)
ATGCCACGAGCCTTATCTGCCACCTCTCATTGTTGTGGGCGTCCCTCCCT
GATAGAACAGGGGTCGCACCACCATTATCGCCGGCGTTGCCATCGCCTAA
GCTTTCGACGGTCTCCGAGCCTTATTGCTCAGCAGAACCACCGCCGCTAT
ACGTGGGCAATGCCCCCCTCTGGAGGGCTTCCACTCGACTGGCGGGCGGA
GGCCTCAGCCTCCTGGATGCGCGTCTTCTCTCATACGCGTCCATCCACTT
CGTGCCGTCGCTCTCGGCGGCGATTCACTTATAGCCTGACTGACACGAGC
ATGCTCCATCACACCACACGGTGCGACCGTCTCGTGCGGCGAGGTGCGTG
CGCCAGCGCCGCCCAACTTAGCTTTCTCCACCGATCTCTGCGGTGAATGC
CACGAGCCTTATCTGCCACCTCTCATTGTTGTGGGCGTCCCTCCCTGATA
GAACAGGGGTCGCACCACCATTATCGCCGGCGTTGCCATCGCCTAAGCTT
TCGACGGTCTCCGAGCCTTATTGCTCAGCAGAACCACCGCCGCTATACGT
GGGCAATGCCCCCCTCTGGAGGGCTTCCACTCGACTGGCGGGCGGAGGCC
TCAGCCTCCTGGATGCGCGTCTTCTCTCATACGCGTCCATCCACTTCGTG
CCGTCGCTCTCGGCGGCGATTCACTTATAGCCTGACTGACACGAGCATGC
TCCATCACACCACACGGTGCGACCGTCTCGTGCGGCGAGGTGCGTGCGCC
AGCGCCGCCCAACTTAGCTTTCTCCACCGATCTCTGCGGTGA
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