mRNA_H-elongata_contig112191.992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112191.992.1
Unique NamemRNA_H-elongata_contig112191.992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.340e-52
Identity = 119/243 (48.97%), Postives = 139/243 (57.20%), Query Frame = 1 
Query:  337 DQLLWASTVAAASCRCSIPVLVTCDWDG-VEDEGGFGRERNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLYLDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNA-ATLTPAPGLPW-GGAHWTKIRWGLMVAGARTEKVGEVERSLTVDEAPEAIASPT-----------ALHRDGRERSEAAIR-LLSAVGGGDKM---TPLWGPSQVFLVGMRV 1011
            D LLWA+TVAA +CRCS+PVLV+CDWDG VED+   G    +            GAS KGYS PGS+G ACSVRFQTAWT++P  ECL+LDGLT+L LSKI+DAHCLPGRAFAP VST VQQ+WEWTKP   A   PAP LPW GG                     +  R  T    P     P            A  R G    E A+R LL A+GGG +    TP+WGP +  LV + V
Sbjct:    4 DHLLWATTVAAGNCRCSVPVLVSCDWDGLVEDDSSGGVVVQS------------GASCKGYSTPGSKGVACSVRFQTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEEAAQLPAPALPWEGGXXXXXXXXXXXXXXXXXXXXXDGRRGGTSLGEPTVGGDPQGPTTXXXXXXXAGDRGGVGSREDAVRQLLRAIGGGREQEIGTPVWGPDEDPLVSIFV 234
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BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 8.450e-50
Identity = 113/242 (46.69%), Postives = 134/242 (55.37%), Query Frame = 1 
Query:  337 DQLLWASTVAAASCRCSIPVLVTCDWDGVEDEGGFGRERNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLYLDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNA-ATLTPAPGLPW-GGAHWTKIRWGLMVAGARTEKVGEVERSLT-VDEAPEA-----------IASPTALHRDGRERSEAAIRLLSAVGGG---DKMTPLWGPSQVFLVGMRV 1011
            D LLWA+TVAA +C+CS+PVLV+CDWDG+ D+   G     V + G        AS KGYS PGS G ACSVRF TAWT++P  ECL+LDGLT+L LSKI+DAHCLPGRAFAP VST VQQ+WEWTKP   A   PAP LPW GG                        R  T + E P                          R +A  +LL AVGGG   +  TP+WGP +  LV + V
Sbjct:    4 DHLLWATTVAAGNCKCSVPVLVSCDWDGLVDDDSSG---GVVVQSG--------ASCKGYSTPGSTGIACSVRFHTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEDAAQLPAPALPWEGGGXXXXXXXXXFXXXXXXXXXXXXRRGGTSLGEFPGGGDPQGPXXXXXXXXXXXXXXXXXAREDAVRQLLRAVGGGSGQESRTPVWGPDEDPLVSIFV 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFM1_ECTSI1.340e-5248.97Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5JCY7_9PHAE8.450e-5046.69Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112191contigH-elongata_contig112191:178..1739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1023
Cds size1023
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.852366-CDS-H-elongata_contig112191:177..6211622929643.852366-CDS-H-elongata_contig112191:177..621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112191 178..621 -
1691679103.2728016-CDS-H-elongata_contig112191:177..6211691679103.2728016-CDS-H-elongata_contig112191:177..621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112191 178..621 -
1622929643.8684464-CDS-H-elongata_contig112191:1160..17391622929643.8684464-CDS-H-elongata_contig112191:1160..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112191 1161..1739 -
1691679103.2807207-CDS-H-elongata_contig112191:1160..17391691679103.2807207-CDS-H-elongata_contig112191:1160..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112191 1161..1739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112191.992.1prot_H-elongata_contig112191.992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112191 178..1739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112191.992.1

>prot_H-elongata_contig112191.992.1 ID=prot_H-elongata_contig112191.992.1|Name=mRNA_H-elongata_contig112191.992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=341bp
SGTSPPTNTSRARCLEHDGQLFSINLVVASAPPPELCPSPDSLPLTPSTA
SKDSKTAAPTIRATASRACDLDNPSLDFAAEGSLTPPQRWFGLKQYVLVR
GLGKSGEDGVSDDQLLWASTVAAASCRCSIPVLVTCDWDGVEDEGGFGRE
RNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLY
LDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNAATLTPAPG
LPWGGAHWTKIRWGLMVAGARTEKVGEVERSLTVDEAPEAIASPTALHRD
GRERSEAAIRLLSAVGGGDKMTPLWGPSQVFLVGMRVSRF*
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mRNA from alignment at H-elongata_contig112191:178..1739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112191.992.1 ID=mRNA_H-elongata_contig112191.992.1|Name=mRNA_H-elongata_contig112191.992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1562bp|location=Sequence derived from alignment at H-elongata_contig112191:178..1739- (Himanthalia elongata Himel1 dioecious)
AGTGGCACTTCTCCGCCGACCAACACCTCCCGCGCTCGGTGCCTAGAGCA
CGATGGCCAGCTGTTCAGCATCAATCTCGTCGTCGCCTCCGCGCCTCCGC
CAGAGCTCTGTCCCTCTCCGGACTCCTTGCCTCTCACACCGTCGACAGCG
TCGAAAGACTCGAAAACCGCAGCGCCCACAATCCGCGCTACGGCTTCCCG
CGCCTGTGACCTCGACAACCCGAGCCTCGACTTCGCCGCAGAGGGCAGTC
TTACGCCCCCCCAGCGCTGGTTTGGCCTGAAGCAGTACGTGCTGGTGCGG
GGCCTTGGAAAATCCGGTGAGGATGGCGTCAGCGACGACCAGCTGCTGTG
GGCGTCGACCGTTGCTGCCGCGAGCTGCAGGTGCTCCATCCCGGTGCTGG
TTACATGCGACTGGGACGGCGTGGAGGACGAAGGAGGATTCGGAAGAGAA
AGAAACGCTGTTGGTGAGGGAGGGAAATGGAGGGGCGGTGGGGGCGGTGC
CAGCTGGAAGGGTTACTCGGCGCCTGGCAGCAGGGGCACCGCGTGCTCTG
TCCGGTTTCAGACGGCATGGACGGATCGAGTGAGGACGGGGGGTGGGGGG
GGAAGGGGGGAGGGAACATAAGAGGGTGGGTCGGCAGGTAGGCAGTCGAT
CAAAATCAAAGAGCCACGCAGGGCAGAAGGAAGTAAAAAATATCGTTGTT
TAGAACCATTGCTCGTAGATGACGCAGACACGAATAAAACCGTATACAGC
TGAGCACTGTTAATGTGACTGATTGTTAGAGCACCCCACTGGGTGATCAG
GCGGCGCCTTGGCTGGCCTGGAGAGAGGTTTATATCTTCCTAGTCTTTCG
TGATGTCGCGGAAAAACTAGTGTGTGCGCTATCCAGCGGTTTTCTTCCCC
CTTCCTCTCTCTAGCGCCGCCTAGTGTACCGACGAAGAAGCATTTCTCGG
TGGAACAAGACTTGTGCAACAAGAAGGTCTATTATAGCCATTTCTGATAG
CTTCTCTCTCGCTCGTGCGCCGCCGGCTCGTCGTGTGCTTTTGTGACTCG
GCGACGGGCGTTCTCCTCTCTCACCCCCCCCCCCCTTCCCCCCCCCCCCC
CCACACACACACATGCAGCCTCCAGTCGAGTGCTTGTACTTAGACGGCCT
CACCGAGCTCTTACTCTCCAAGATCAAGGACGCGCATTGCCTTCCGGGCC
GCGCCTTCGCCCCGAAGGTTTCTACCGCTGTACAGCAGGCGTGGGAGTGG
ACCAAGCCCAACGCGGCAACCCTGACCCCCGCACCCGGGCTACCGTGGGG
TGGAGCGCACTGGACGAAAATACGATGGGGTTTGATGGTGGCAGGGGCAA
GGACAGAAAAAGTAGGAGAAGTAGAGAGAAGTTTAACCGTAGACGAAGCT
CCGGAGGCGATAGCGTCGCCAACAGCTCTTCATCGCGACGGCAGAGAAAG
AAGCGAAGCCGCGATTCGACTCCTGAGCGCTGTGGGTGGGGGCGACAAAA
TGACGCCGCTCTGGGGGCCTTCTCAGGTATTTTTAGTAGGCATGCGCGTG
TCTCGATTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112191:178..1739-

>mRNA_H-elongata_contig112191.992.1 ID=mRNA_H-elongata_contig112191.992.1|Name=mRNA_H-elongata_contig112191.992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2046bp|location=Sequence derived from alignment at H-elongata_contig112191:178..1739- (Himanthalia elongata Himel1 dioecious)
AGTGGCACTTCTCCGCCGACCAACACCTCCCGCGCTCGGTGCCTAGAGCA
CGATGGCCAGCTGTTCAGCATCAATCTCGTCGTCGCCTCCGCGCCTCCGC
CAGAGCTCTGTCCCTCTCCGGACTCCTTGCCTCTCACACCGTCGACAGCG
TCGAAAGACTCGAAAACCGCAGCGCCCACAATCCGCGCTACGGCTTCCCG
CGCCTGTGACCTCGACAACCCGAGCCTCGACTTCGCCGCAGAGGGCAGTC
TTACGCCCCCCCAGCGCTGGTTTGGCCTGAAGCAGTACGTGCTGGTGCGG
GGCCTTGGAAAATCCGGTGAGGATGGCGTCAGCGACGACCAGCTGCTGTG
GGCGTCGACCGTTGCTGCCGCGAGCTGCAGGTGCTCCATCCCGGTGCTGG
TTACATGCGACTGGGACGGCGTGGAGGACGAAGGAGGATTCGGAAGAGAA
AGAAACGCTGTTGGTGAGGGAGGGAAATGGAGGGGCGGTGGGGGCGGTGC
CAGCTGGAAGGGTTACTCGGCGCCTGGCAGCAGGGGCACCGCGTGCTCTG
TCCGGTTTCAGACGGCATGGACGGATCGAAGTGGCACTTCTCCGCCGACC
AACACCTCCCGCGCTCGGTGCCTAGAGCACGATGGCCAGCTGTTCAGCAT
CAATCTCGTCGTCGCCTCCGCGCCTCCGCCAGAGCTCTGTCCCTCTCCGG
ACTCCTTGCCTCTCACACCGTCGACAGCGTCGAAAGACTCGAAAACCGCA
GCGCCCACAATCCGCGCTACGGCTTCCCGCGCCTGTGACCTCGACAACCC
GAGCCTCGACTTCGCCGCAGAGGGCAGTCTTACGCCCCCCCAGCGCTGGT
TTGGCCTGAAGCAGTACGTGCTGGTGCGGGGCCTTGGAAAATCCGGTGAG
GATGGCGTCAGCGACGACCAGCTGCTGTGGGCGTCGACCGTTGCTGCCGC
GAGCTGCAGGTGCTCCATCCCGGTGCTGGTTACATGCGACTGGGACGGCG
TGGAGGACGAAGGAGGATTCGGAAGAGAAAGAAACGCTGTTGGTGAGGGA
GGGAAATGGAGGGGCGGTGGGGGCGGTGCCAGCTGGAAGGGTTACTCGGC
GCCTGGCAGCAGGGGCACCGCGTGCTCTGTCCGGTTTCAGACGGCATGGA
CGGATCGACCTCCAGTCGAGTGCTTGTACTTAGACGGCCTCACCGAGCTC
TTACTCTCCAAGATCAAGGACGCGCATTGCCTTCCGGGCCGCGCCTTCGC
CCCGAAGGTTTCTACCGCTGTACAGCAGGCGTGGGAGTGGACCAAGCCCA
ACGCGGCAACCCTGACCCCCGCACCCGGGCTACCGTGGGGTGGAGCGCAC
TGGACGAAAATACGATGGGGTTTGATGGTGGCAGGGGCAAGGACAGAAAA
AGTAGGAGAAGTAGAGAGAAGTTTAACCGTAGACGAAGCTCCGGAGGCGA
TAGCGTCGCCAACAGCTCTTCATCGCGACGGCAGAGAAAGAAGCGAAGCC
GCGATTCGACTCCTGAGCGCTGTGGGTGGGGGCGACAAAATGACGCCGCT
CTGGGGGCCTTCTCAGGTATTTTTAGTAGGCATGCGCGTGTCTCGATTTT
GACCTCCAGTCGAGTGCTTGTACTTAGACGGCCTCACCGAGCTCTTACTC
TCCAAGATCAAGGACGCGCATTGCCTTCCGGGCCGCGCCTTCGCCCCGAA
GGTTTCTACCGCTGTACAGCAGGCGTGGGAGTGGACCAAGCCCAACGCGG
CAACCCTGACCCCCGCACCCGGGCTACCGTGGGGTGGAGCGCACTGGACG
AAAATACGATGGGGTTTGATGGTGGCAGGGGCAAGGACAGAAAAAGTAGG
AGAAGTAGAGAGAAGTTTAACCGTAGACGAAGCTCCGGAGGCGATAGCGT
CGCCAACAGCTCTTCATCGCGACGGCAGAGAAAGAAGCGAAGCCGCGATT
CGACTCCTGAGCGCTGTGGGTGGGGGCGACAAAATGACGCCGCTCTGGGG
GCCTTCTCAGGTATTTTTAGTAGGCATGCGCGTGTCTCGATTTTGA
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