mRNA_H-elongata_contig11211.985.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11211.985.1
Unique NamemRNA_H-elongata_contig11211.985.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11211.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11211contigH-elongata_contig11211:4038..4700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size642
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11211.985.1prot_H-elongata_contig11211.985.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11211 4076..4588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.2262046-UTR-H-elongata_contig11211:4037..40751622929643.2262046-UTR-H-elongata_contig11211:4037..4075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11211 4038..4075 +
1691679102.9948468-UTR-H-elongata_contig11211:4037..40751691679102.9948468-UTR-H-elongata_contig11211:4037..4075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11211 4038..4075 +
1622929643.2672076-UTR-H-elongata_contig11211:4588..47001622929643.2672076-UTR-H-elongata_contig11211:4588..4700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11211 4589..4700 +
1691679103.0250697-UTR-H-elongata_contig11211:4588..47001691679103.0250697-UTR-H-elongata_contig11211:4588..4700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11211 4589..4700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.2429516-CDS-H-elongata_contig11211:4075..42051622929643.2429516-CDS-H-elongata_contig11211:4075..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 4076..4205 +
1691679103.007897-CDS-H-elongata_contig11211:4075..42051691679103.007897-CDS-H-elongata_contig11211:4075..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 4076..4205 +
1622929643.2545786-CDS-H-elongata_contig11211:4226..45881622929643.2545786-CDS-H-elongata_contig11211:4226..4588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 4227..4588 +
1691679103.0165436-CDS-H-elongata_contig11211:4226..45881691679103.0165436-CDS-H-elongata_contig11211:4226..4588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 4227..4588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11211.985.1

>prot_H-elongata_contig11211.985.1 ID=prot_H-elongata_contig11211.985.1|Name=mRNA_H-elongata_contig11211.985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MTAVDERVRRIDILWGLVGAFFTRSLVTRGDVAEPTDPARIGTAAASTSS
FLTIIPAVAASTGDAAIFRSSAAVTMSSSPWLWFTDELLELDPTTPSVPE
SGAGEPALLLALNAVATSANSRIIALPFSEPVTAAAFCPAATSARAGPFL
SAEDTLQSDAGPR*
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mRNA from alignment at H-elongata_contig11211:4038..4700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11211.985.1 ID=mRNA_H-elongata_contig11211.985.1|Name=mRNA_H-elongata_contig11211.985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig11211:4038..4700+ (Himanthalia elongata Himel1 dioecious)
TGGCGGTGGTGCTTCCCGTCGGAGCGTTCCACTGCGTAATGACCGCGGTT
GACGAGCGGGTAAGGCGGATCGATATCCTCTGGGGTCTGGTCGGCGCCTT
CTTCACGCGCTCCCTCGTTACGCGGGGAGACGTCGCCGAGCCGACGGATC
CCGCGAGAATCGGCACCGACGCCCCGTCGCTACTCTTTCCGGCCGCCTCG
ACCAGTTCTTTCTTGACCATCATTCCCGCGGTAGCGGCCTCAACTGGCGA
CGCAGCGATCTTTCGATCCTCGGCTGCCGTTACCATGTCATCATCGCCGT
GGTTATGGTTCACCGACGAGCTTCTCGAACTTGATCCGACGACACCCTCC
GTCCCCGAGTCCGGCGCGGGTGAACCAGCCCTTCTCTTGGCGTTGAACGC
CGTCGCCACATCCGCCAACTCTCGCATCATCGCTTTACCCTTCTCGGAAC
CAGTGACCGCTGCCGCTTTCTGTCCTGCTGCAACGTCAGCGAGAGCGGGT
CCCTTTCTCTCGGCCGAGGATACCCTGCAATCAGATGCGGGGCCACGGTA
GTTGACATTTTTCGACGGGTTCACCACAGCTTTTCGCTCGGGAGCTCTGG
GGCCGTTGTCGATCGACTGGCCCCCTGCGGTCGAGTCCCCCGGCGTGGCC
GCCGCTGCCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig11211:4038..4700+

>mRNA_H-elongata_contig11211.985.1 ID=mRNA_H-elongata_contig11211.985.1|Name=mRNA_H-elongata_contig11211.985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig11211:4038..4700+ (Himanthalia elongata Himel1 dioecious)
ATGACCGCGGTTGACGAGCGGGTAAGGCGGATCGATATCCTCTGGGGTCT
GGTCGGCGCCTTCTTCACGCGCTCCCTCGTTACGCGGGGAGACGTCGCCG
AGCCGACGGATCCCGCGAGAATCGGCACCGATGACCGCGGTTGACGAGCG
GGTAAGGCGGATCGATATCCTCTGGGGTCTGGTCGGCGCCTTCTTCACGC
GCTCCCTCGTTACGCGGGGAGACGTCGCCGAGCCGACGGATCCCGCGAGA
ATCGGCACCGCGGCCGCCTCGACCAGTTCTTTCTTGACCATCATTCCCGC
GGTAGCGGCCTCAACTGGCGACGCAGCGATCTTTCGATCCTCGGCTGCCG
TTACCATGTCATCATCGCCGTGGTTATGGTTCACCGACGAGCTTCTCGAA
CTTGATCCGACGACACCCTCCGTCCCCGAGTCCGGCGCGGGTGAACCAGC
CCTTCTCTTGGCGTTGAACGCCGTCGCCACATCCGCCAACTCTCGCATCA
TCGCTTTACCCTTCTCGGAACCAGTGACCGCTGCCGCTTTCTGTCCTGCT
GCAACGTCAGCGAGAGCGGGTCCCTTTCTCTCGGCCGAGGATACCCTGCA
ATCAGATGCGGGGCCACGGTAGCGGCCGCCTCGACCAGTTCTTTCTTGAC
CATCATTCCCGCGGTAGCGGCCTCAACTGGCGACGCAGCGATCTTTCGAT
CCTCGGCTGCCGTTACCATGTCATCATCGCCGTGGTTATGGTTCACCGAC
GAGCTTCTCGAACTTGATCCGACGACACCCTCCGTCCCCGAGTCCGGCGC
GGGTGAACCAGCCCTTCTCTTGGCGTTGAACGCCGTCGCCACATCCGCCA
ACTCTCGCATCATCGCTTTACCCTTCTCGGAACCAGTGACCGCTGCCGCT
TTCTGTCCTGCTGCAACGTCAGCGAGAGCGGGTCCCTTTCTCTCGGCCGA
GGATACCCTGCAATCAGATGCGGGGCCACGGTAG
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