mRNA_H-elongata_contig11211.984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11211.984.1
Unique NamemRNA_H-elongata_contig11211.984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11211.984.1 vs. uniprot
Match: D8LTN4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-15
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   91 VRPAKKRYPPNAWKRRCADGTCLVGASFGYEESSAVYCNAHKDAGIVNVTH 243
            V P KKR PPNAWKRRCADGTC +GASF      A YC+AH DAG+VNVTH
Sbjct:  429 VGPVKKRSPPNAWKRRCADGTCQLGASFAMRGEPAKYCSAHSDAGMVNVTH 479
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BLAST of mRNA_H-elongata_contig11211.984.1 vs. uniprot
Match: A0A6H5JT02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT02_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.490e-15
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   91 VRPAKKRYPPNAWKRRCADGTCLVGASFGYEESSAVYCNAHKDAGIVNVTH 243
            V P KKR PPNAWKRRCADGTC +GASF      A YC+AH DAG+VNVTH
Sbjct:  850 VGPVKKRSPPNAWKRRCADGTCQLGASFAMRGEPAKYCSAHSDAGMVNVTH 900
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11211.984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTN4_ECTSI1.400e-1570.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT02_9PHAE1.490e-1570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11211contigH-elongata_contig11211:1474..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size454
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11211.984.1prot_H-elongata_contig11211.984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11211 1474..3552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.0850441-CDS-H-elongata_contig11211:1473..15521622929643.0850441-CDS-H-elongata_contig11211:1473..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 1474..1552 -
1691679102.9519207-CDS-H-elongata_contig11211:1473..15521691679102.9519207-CDS-H-elongata_contig11211:1473..1552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 1474..1552 -
1622929643.1022246-CDS-H-elongata_contig11211:1850..19611622929643.1022246-CDS-H-elongata_contig11211:1850..1961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 1851..1961 -
1691679102.9668455-CDS-H-elongata_contig11211:1850..19611691679102.9668455-CDS-H-elongata_contig11211:1850..1961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 1851..1961 -
1622929643.1174226-CDS-H-elongata_contig11211:3289..35521622929643.1174226-CDS-H-elongata_contig11211:3289..3552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 3290..3552 -
1691679102.9768217-CDS-H-elongata_contig11211:3289..35521691679102.9768217-CDS-H-elongata_contig11211:3289..3552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11211 3290..3552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11211.984.1

>prot_H-elongata_contig11211.984.1 ID=prot_H-elongata_contig11211.984.1|Name=mRNA_H-elongata_contig11211.984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
DGDEDDDDFGSCGKDGGGNGGSGGGGGMRCVRPAKKRYPPNAWKRRCADG
TCLVGASFGYEESSAVYCNAHKDAGIVNVTHRRCEEPGCPHQPSFNMEGE
KAVYFRSHKRDGMINVSSPRCRSPGPVTQDFPLPSGSTTTPAAIADTSPE
P
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mRNA from alignment at H-elongata_contig11211:1474..3552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11211.984.1 ID=mRNA_H-elongata_contig11211.984.1|Name=mRNA_H-elongata_contig11211.984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig11211:1474..3552- (Himanthalia elongata Himel1 dioecious)
GACGGCGACGAGGATGACGACGACTTCGGGAGTTGTGGCAAAGATGGGGG
GGGCAATGGCGGAAGCGGCGGTGGTGGTGGTATGAGATGCGTGAGACCCG
CGAAGAAGCGTTATCCCCCAAACGCATGGAAGCGGCGGTGCGCGGATGGA
ACATGCCTGGTCGGGGCTAGCTTCGGATACGAGGAAAGCTCGGCCGTGTA
CTGTAATGCGCACAAGGACGCGGGGATAGTGAACGTTACCCACAGGCGCT
GTGAAGAGCCTGGGTGAGGCAAAAAAAAAATCGCTTTTGCTCGCGCTTGA
GAGAGGAACTGAGAAAGGAAGCTATTTCTGATGGCCCACGTTTGGGACTG
GCTTTCGTACTAATACTTAATATTGGTCTTCTTTTCAGGCGGAGAACGTT
GCTTGAGCTCCTTAGCTCTATGTTGGCGGCAAAGTGTTTGTAGCCAAGCA
TTTTGAATGGGCAGGCAACCGTCATGCCCGCTCTTCCCGTAGTGGGTGTG
GGAAAATAAAGGCGTACATTACTTGGTCCAGGGGGTTACAGTACCTGAAT
AGGCGACACCCGTTACTCAAGCTACCTTGAGGGCTATTGGCTTAGTGCCG
GCGGTCTCTCGGTAGTAAAAACCATCGGTACGCAATTGCGTGACCTGATG
AAATCGGGATTGACCCGATGGCGGTTGACGGTAGAAATGGACGTCGTCGC
GGAAAACGGGAGGATTGAGAGGATCCCGGGAGTAAGCACCAGATTCATCC
TGGGTTGAGAGAATAAGTGGACTGAAGCGGGACGGGACTGCTGAACCTAT
CTCGCGAGACCAAAATCTCAGGCGCGACCGGGGACAGGGAAAACTATTTT
CCCTGTTTAGCTGACCACGAGCAGAAGGCAACCAAATCCGGTTGACCCTT
CTGCTAAATGTGCGACCATACATACATACACATATATGTATATATATGTA
GGCTCTACGGGTGATGTTTTAAAATGTCGGGCGTATTTTGTGTCTGCTGT
GTTTCCACTCGAATTAGAATTATCCCATCAGGTGAAGCGATATCGAGTTC
GTTCTGCAAATCTTGGTCGGTGTTCGTCGAAGGCTTTCTACTCTTGTCTT
GATATGTTTGCCATGGCCATGTCTGTTTTTCTAATAGCTAGAGTCCGAAA
TTTGATACAATGTAACCATGCGCTGAACTTTTTTTTTCTCTCCCCCTCCC
GCACCCCCTCTCGTTACACAGTCCACTCTCTAGGCCTTGGCTTGGCGTCC
CCACATGACGAATAATGTATTCCGTGTGACGATTTTGTGTTCAAAGGTAG
TAATGTACGCATTCGAACCTGACGATAGTTGGTCCCCTGGATTGCACCTC
TCACGGTGGTACTAAGAAGGTGTGGATGCTCGGAGGGATGGAATGAGTTC
AAGGTTTTAAAATAAAAACGCTGCTATTATAGCTCTCTCTCTTTCTCTGT
TATAGTCTATATATCTCTCTGTCATAGTCTCTCTCTCTTTCTCTCTCTGA
GCCGCGTCGCTCTTAAGGATGTAGACGATTGCATACACCTCATAATTCTA
TTGAGGCGTCGTCTATCGACACACCGCCGATCCCTTTGCAGGTGCCCCCA
CCAGCCTAGCTTCAACATGGAGGGCGAGAAGGCTGTGTACTTCCGGTCCC
ACAAAAGAGACGGGATGATCAACGTCTCCTCCCCACGATGCCGCAGCCCA
GGGTAAGGAGGGTTACGATACAGGGTTAATGGTTGTTGGCTCGCTCGAAG
CATCTTCGCCCCCCCCCCCCCACCCACACCCGAAAAAAAAACCCATACTT
TTCAGCAGTCACTGGGTTACAAAGAAAAAACGTCATTTGGTGTGTATGTG
TTTATGTGTCTGTGTTTATTTGTTCACTTAGAAGTACCGGTATTTTATTA
TGAAGTGAAAAAAATCTTGCAGGGATCACAAAGTCAATGGCACACACGCA
AAGCCCGGCAACATTAAAAAAAACGAATCGCAACGGCTTCCCCTCGCCAG
CCCTGTCACCCAGGACTTCCCTCTCCCGTCGGGGTCAACGACCACGCCAG
CGGCGATCGCGGACACTTCCCCCGAGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig11211:1474..3552-

>mRNA_H-elongata_contig11211.984.1 ID=mRNA_H-elongata_contig11211.984.1|Name=mRNA_H-elongata_contig11211.984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig11211:1474..3552- (Himanthalia elongata Himel1 dioecious)
GACGGCGACGAGGATGACGACGACTTCGGGAGTTGTGGCAAAGATGGGGG
GGGCAATGGCGGAAGCGGCGGTGGTGGTGGTATGAGATGCGTGAGACCCG
CGAAGAAGCGTTATCCCCCAAACGCATGGAAGCGGCGGTGCGCGGATGGA
ACATGCCTGGTCGGGGCTAGCTTCGGATACGAGGAAAGCTCGGCCGTGTA
CTGTAATGCGCACAAGGACGCGGGGATAGTGAACGTTACCCACAGGCGCT
GTGAAGAGCCTGGGACGGCGACGAGGATGACGACGACTTCGGGAGTTGTG
GCAAAGATGGGGGGGGCAATGGCGGAAGCGGCGGTGGTGGTGGTATGAGA
TGCGTGAGACCCGCGAAGAAGCGTTATCCCCCAAACGCATGGAAGCGGCG
GTGCGCGGATGGAACATGCCTGGTCGGGGCTAGCTTCGGATACGAGGAAA
GCTCGGCCGTGTACTGTAATGCGCACAAGGACGCGGGGATAGTGAACGTT
ACCCACAGGCGCTGTGAAGAGCCTGGGTGCCCCCACCAGCCTAGCTTCAA
CATGGAGGGCGAGAAGGCTGTGTACTTCCGGTCCCACAAAAGAGACGGGA
TGATCAACGTCTCCTCCCCACGATGCCGCAGCCCAGGGTGCCCCCACCAG
CCTAGCTTCAACATGGAGGGCGAGAAGGCTGTGTACTTCCGGTCCCACAA
AAGAGACGGGATGATCAACGTCTCCTCCCCACGATGCCGCAGCCCAGGCC
CTGTCACCCAGGACTTCCCTCTCCCGTCGGGGTCAACGACCACGCCAGCG
GCGATCGCGGACACTTCCCCCGAGCCACCCTGTCACCCAGGACTTCCCTC
TCCCGTCGGGGTCAACGACCACGCCAGCGGCGATCGCGGACACTTCCCCC
GAGCCA
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