mRNA_H-elongata_contig112088.983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112088.983.1
Unique NamemRNA_H-elongata_contig112088.983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.080e-29
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 GRTGNHYMTLSAYLAMGYCCRSRLLTLPQKDSIMPSED-GVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAFGYE 258
            GR+GNH++ +S+YLAMG+CCRSRLLTLP+ D+ MP +D G GF A  RWF FS  + P P FE++ D+PEVCRP   DG   AFGYE
Sbjct:  120 GRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAMPGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAFGYE 206
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.310e-22
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   46 MGYCCRSRLLTLPQKDSIMPSEDGVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAFGYE 258
            MG+CCRSRLLTLP  D  +P E    F++  RWF FSN ++P PE++EM DD EVCRP T DGG KAFGYE
Sbjct:    1 MGFCCRSRLLTLPATDDKLPDELD-NFTSARRWFDFSNVTVPWPEYQEMGDDQEVCRPETKDGGRKAFGYE 70
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.510e-7
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:    1 GRTGNHYMTLSAYLAMGYCCRSRLLTLPQKDSIMPSEDGVGFSAEIRWFRFSNASLPRPEFEEM 192
            GR+GNHYM +SA  ++ YCC  ++L LP  D   P+E+G  F +    F FS+      E E  
Sbjct:  211 GRSGNHYMAISAMFSLAYCCGVKVLQLPDTDYRFPTEEGGEFKSSKHLFTFSSNGTDGVEAERQ 274
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.610e-6
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:    1 GRTGNHYMTLSAYLAMGYCCRSRLLTLPQKD-SIMPSEDGVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAF 249
            GR GN +  L   L +GYCC+S+L++LP KD ++ P   G G     RW+ F+NA    P+ E    D   C      GG +AF
Sbjct:  155 GRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGP-RWYDFTNA----PDVEGF--DASSCPADITWGGREAF 231
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.250e-5
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:    4 RTGNHYMTLSAYLAMGYCCRSRLLTLPQKDSIM-PSEDGVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAF 249
            RTGNH+ +    LA+GYCC+S+++ LP KD ++ P     G     RWF FS+A    P+ +    D   C       G +AF
Sbjct:  127 RTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGP-RWFDFSSA----PDVDGF--DSSACSADITWAGQRAF 202
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.710e-5
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:    4 RTGNHYMTLSAYLAMGYCCRSRLLTLPQKDS-IMPSEDGVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAF 249
            R GN + ++S  L++GYCC+SRLL+LP KD  + P     G     R F FS+A    P+ E    D   C P    GG  AF
Sbjct:  180 RLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGP-RNFDFSSA----PDVEGF--DYSSCPPEITWGGTNAF 255
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BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.190e-5
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    4 RTGNHYMTLSAYLAMGYCCRSRLLTLPQKDS-IMPSEDGVGFSAEIRWFRFSNASLPRPEFEEMRDDPEVCRPHTNDGGGKAFGYE 258
            R GN ++++   L++GYCC+SRL++LP KD  + P     G     R F FS+A    P+ E    D   C P    GG +AF  E
Sbjct:  185 RLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGP-RNFDFSSA----PDVEGF--DSSSCPPEIKWGGTQAFHLE 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112088.983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRV9_ECTSI2.080e-2959.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV8_ECTSI4.310e-2261.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHC1_ECTSI5.510e-739.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2M2_ECTSI2.610e-638.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K2F3_9PHAE1.250e-536.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K7B3_9PHAE1.710e-539.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L4_ECTSI3.190e-537.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112088contigH-elongata_contig112088:534..1244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-23_004120.2
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112088.983.1prot_H-elongata_contig112088.983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112088 534..1223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.9673686-CDS-H-elongata_contig112088:533..7191622929642.9673686-CDS-H-elongata_contig112088:533..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112088 534..719 -
1691679102.9266484-CDS-H-elongata_contig112088:533..7191691679102.9266484-CDS-H-elongata_contig112088:533..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112088 534..719 -
1622929643.005727-CDS-H-elongata_contig112088:1172..12231622929643.005727-CDS-H-elongata_contig112088:1172..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112088 1173..1223 -
1691679102.9345362-CDS-H-elongata_contig112088:1172..12231691679102.9345362-CDS-H-elongata_contig112088:1172..1223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112088 1173..1223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.0175047-UTR-H-elongata_contig112088:1223..12441622929643.0175047-UTR-H-elongata_contig112088:1223..1244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112088 1224..1244 -
1691679102.9420054-UTR-H-elongata_contig112088:1223..12441691679102.9420054-UTR-H-elongata_contig112088:1223..1244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112088 1224..1244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112088.983.1

>prot_H-elongata_contig112088.983.1 ID=prot_H-elongata_contig112088.983.1|Name=mRNA_H-elongata_contig112088.983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MTLSAYLAMGYCCRSRLLTLPQKDSIMPSEDGVGFSAEIRWFRFSNASLP
RPEFEEMRDDPEVCRPHTNDGGGKAFGYE
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mRNA from alignment at H-elongata_contig112088:534..1244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112088.983.1 ID=mRNA_H-elongata_contig112088.983.1|Name=mRNA_H-elongata_contig112088.983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=711bp|location=Sequence derived from alignment at H-elongata_contig112088:534..1244- (Himanthalia elongata Himel1 dioecious)
GGCAGAACCGGTAATCACTACATGACCCTCTCGGCCTACCTCGCCATGGG
GTATTGCTGTAGGTCCAGATTGGTAAGAGAGGGAGAGAGAAATCCGATAT
CGAGAGGTCGCTCTTTATTCCCCCCACCCCCCTTCTCTCTCGAGCTTCTA
CGGTCGATAGGGGGGGAAGACACCGCAGTTTTTAAAATATAAACAATACA
CAAAATATATTCATTTTTCCGCGCCCTTTTAGCTTTTAGCGGGGGTCATA
CCCCTCTTACCCTTGTGTGTGTGTGTGTGTATATGTGTATTGGAAGCTCC
TAGATAATCATGAAGTAGATATATGTATATAGCTAATGCGATTTGTTTTG
CGGTTGCGTATTTTCTCTCGGCTCTCGTGCTATTTGCTGTAGAGATACAC
CAACCGATCTCTTTGACTCAAAAATAAACCACAAACAACAAGTAGTTATA
AAAGCTCATACACACGCTCGCACTTGCCCGTGCCCGTGCCCGCGCGCGTG
TTTTCCCACGACCACACGACGATAGCTCACGCTGCCTCAGAAGGACAGCA
TCATGCCTTCGGAAGACGGGGTCGGTTTCTCGGCCGAGATACGGTGGTTC
CGTTTCTCGAACGCCTCGCTGCCTCGGCCGGAGTTCGAAGAGATGAGGGA
TGACCCAGAAGTTTGTCGGCCGCACACCAATGATGGCGGTGGCAAAGCGT
TTGGGTATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig112088:534..1244-

>mRNA_H-elongata_contig112088.983.1 ID=mRNA_H-elongata_contig112088.983.1|Name=mRNA_H-elongata_contig112088.983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig112088:534..1244- (Himanthalia elongata Himel1 dioecious)
ATGACCCTCTCGGCCTACCTCGCCATGGGGTATTGCTGTAGGTCCAGATT
GATGACCCTCTCGGCCTACCTCGCCATGGGGTATTGCTGTAGGTCCAGAT
TGCTCACGCTGCCTCAGAAGGACAGCATCATGCCTTCGGAAGACGGGGTC
GGTTTCTCGGCCGAGATACGGTGGTTCCGTTTCTCGAACGCCTCGCTGCC
TCGGCCGGAGTTCGAAGAGATGAGGGATGACCCAGAAGTTTGTCGGCCGC
ACACCAATGATGGCGGTGGCAAAGCGTTTGGGTATGAACTCACGCTGCCT
CAGAAGGACAGCATCATGCCTTCGGAAGACGGGGTCGGTTTCTCGGCCGA
GATACGGTGGTTCCGTTTCTCGAACGCCTCGCTGCCTCGGCCGGAGTTCG
AAGAGATGAGGGATGACCCAGAAGTTTGTCGGCCGCACACCAATGATGGC
GGTGGCAAAGCGTTTGGGTATGAA
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