mRNA_H-elongata_contig112084.982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112084.982.1
Unique NamemRNA_H-elongata_contig112084.982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-12
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGE-NGFTCLD 132
            +G+G CDM+NNNE C +DGGDCC CTC   PN  CG  +GF C+D
Sbjct:  205 VGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACID 249
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.290e-12
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD 132
            IGDGLCD +NNNE+CL+DGGDCC CTC     + CG N + CLD
Sbjct:  333 IGDGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLD 376
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.210e-12
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGE-NGFTCLD 132
            IGDG C+M+NNNE C +DGGDCC CTC   PN+ CG  + F C+D
Sbjct:  219 IGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACID 263
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCG-ENGFTCLD 132
            +GDG CDM+NNN  C +DGGDCC CTC   PN+ CG  +GF C+D
Sbjct:  183 MGDGYCDMDNNNAACAYDGGDCCECTCE--PNNKCGGRSGFACID 225
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.510e-10
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD 132
            + DG CD+ENNN EC +DGGDCC CTC     + CG  GF+CLD
Sbjct: 1977 VTDGWCDLENNNAECNWDGGDCCECTCVDSQ-YECGIQGFSCLD 2019
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-9
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGEN------GFTCLD 132
            +GDG+CD ENNNE C +DGGDCC CTC   P+   GE       GF C+D
Sbjct:   16 VGDGICDEENNNELCGYDGGDCCECTCV--PSVSAGEYSVSCEYGFACID 63
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.960e-9
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD 132
            + DG CD  NNNEEC +DGGDCC CTC     + CG  GF C+D
Sbjct:  184 LADGDCDQINNNEECGYDGGDCCFCTCLD-DFYECGIRGFACID 226
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-8
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD 132
            IGDG CD  NNNEEC +DGGDCC CTC  G  + CG   F C D
Sbjct:  318 IGDGHCDYYNNNEECDWDGGDCCACTCVSGY-YTCGYYTFDCED 360
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.770e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTC----THGPNHHCGE----NGFTCLD 132
            IGDG+CD ENN EEC FDGGDCC CTC    +   ++ C E    N F CLD
Sbjct:  313 IGDGMCDDENNKEECGFDGGDCCDCTCVVPSSAWSDYACQEVYNINSFDCLD 364
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BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-8
Identity = 24/44 (54.55%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:    1 IGDGLCDMENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD 132
            IGDG CD  NNNEEC +DGGDCC CTC     + C      C D
Sbjct:  231 IGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQD 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112084.982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI1.170e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G136_ECTSI2.290e-1263.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE8.210e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI1.370e-1060.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI6.510e-1059.09LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI82_ECTSI3.980e-954.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE7.960e-956.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE2.040e-861.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI2.770e-855.77Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.800e-854.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112084contigH-elongata_contig112084:301..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_000960.1
Exons1
Model size132
Cds size111
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.8538373-UTR-H-elongata_contig112084:300..3211622929642.8538373-UTR-H-elongata_contig112084:300..321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112084 301..321 +
1691679102.9096293-UTR-H-elongata_contig112084:300..3211691679102.9096293-UTR-H-elongata_contig112084:300..321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112084 301..321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.8697486-CDS-H-elongata_contig112084:321..4321622929642.8697486-CDS-H-elongata_contig112084:321..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112084 322..432 +
1691679102.918022-CDS-H-elongata_contig112084:321..4321691679102.918022-CDS-H-elongata_contig112084:321..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112084 322..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112084.982.1prot_H-elongata_contig112084.982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112084 322..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112084.982.1

>prot_H-elongata_contig112084.982.1 ID=prot_H-elongata_contig112084.982.1|Name=mRNA_H-elongata_contig112084.982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MENNNEECLFDGGDCCLCTCTHGPNHHCGENGFTCLD
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mRNA from alignment at H-elongata_contig112084:301..432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112084.982.1 ID=mRNA_H-elongata_contig112084.982.1|Name=mRNA_H-elongata_contig112084.982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig112084:301..432+ (Himanthalia elongata Himel1 dioecious)
ATAGGGGATGGTCTTTGTGATATGGAAAATAATAACGAGGAGTGCCTCTT
CGACGGGGGAGATTGTTGCCTCTGCACCTGCACCCATGGGCCTAATCATC
ATTGTGGCGAAAACGGCTTTACATGTTTGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig112084:301..432+

>mRNA_H-elongata_contig112084.982.1 ID=mRNA_H-elongata_contig112084.982.1|Name=mRNA_H-elongata_contig112084.982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig112084:301..432+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAATAATAACGAGGAGTGCCTCTTCGACGGGGGAGATTGTTGCCT
CTGCACCTGCACCCATGGGCCTAATCATCATTGTGGCGAAAACGGCTTTA
CATGTTTGGACATGGAAAATAATAACGAGGAGTGCCTCTTCGACGGGGGA
GATTGTTGCCTCTGCACCTGCACCCATGGGCCTAATCATCATTGTGGCGA
AAACGGCTTTACATGTTTGGAC
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