mRNA_H-elongata_contig11206.979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11206.979.1
Unique NamemRNA_H-elongata_contig11206.979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 7.130e-96
Identity = 158/199 (79.40%), Postives = 176/199 (88.44%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCD-EGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            LDTFTFLFIHV GVRKLEALFV LVS+MTVAFF+DF +SPP+ +DVAEGFSFT  SYA V ALGLIGAVIMPHNIYLHSALVLSR  DR+ P+KLWEATKYYTIDSGIAL VAF+INLAVVCTFAKQFYD +C+TAS  SACF G SID ++PSYG+CD +G G+CQEIGLSAAA AL+GTLGS+AKYVWAVGLL  G+
Sbjct:  212 LDTFTFLFIHVFGVRKLEALFVVLVSIMTVAFFIDFFMSPPSPADVAEGFSFTAESYATVPALGLIGAVIMPHNIYLHSALVLSRVVDRTRPRKLWEATKYYTIDSGIALMVAFMINLAVVCTFAKQFYDETCATASEPSACFVGDSIDPTQPSYGSCDADGTGLCQEIGLSAAAAALRGTLGSSAKYVWAVGLLAAGQ 410          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.160e-70
Identity = 123/197 (62.44%), Postives = 147/197 (74.62%), Query Frame = 1
Query:    4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            DTFTFLF+HV GVRKLE LFV LV+ MTV FF+++   PP A +V +GF   + S+  VTALGL+GAVIMPHN+YLHSALVLSR   R N +K+WEA KY TIDS +AL +AFLINLAVV TFA QFY + C      +AC T  SID   P++GTC +G GVCQEIGL  A DAL+G+LGS AKYVWA+GLL  G+
Sbjct:  161 DTFTFLFMHVFGVRKLEGLFVVLVATMTVTFFINYASEPPAAIEVLKGFQPKITSHTSVTALGLLGAVIMPHNLYLHSALVLSRRIGRDNKRKVWEAVKYCTIDSALALGLAFLINLAVVGTFAVQFYSVDCINTRMPTACLTLGSIDRDSPTFGTCAKGLGVCQEIGLGHAGDALRGSLGSNAKYVWAIGLLAAGQ 357          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A4D9D1G8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1G8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.460e-58
Identity = 114/198 (57.58%), Postives = 138/198 (69.70%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            +DTFTFL IH  GVRKLE++FV LV++MTV FF++FG SPP + D+AEGF   +  YA+++A+GLIGAVIMPHNIYLHSALVLSR  DR  P  + EA KY+ IDS IALTV+F+INLAVV  FA  F+D  C+TA        G    LS    G CD     CQ IGL+ A DAL   LG +AKY+WAVGLL  G+
Sbjct:  110 IDTFTFLGIHYFGVRKLESVFVLLVAIMTVCFFINFGKSPPPSRDIAEGFVPQIRPYAVLSAVGLIGAVIMPHNIYLHSALVLSRKVDRRRPAHVKEANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAP------GGPLACLSRTEEGVCD-----CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQ 296          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.570e-55
Identity = 114/198 (57.58%), Postives = 138/198 (69.70%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            +DTFTFL IH  GVRKLE++FV LV++MTV FF++FG SPP + D+AEGF   +  YA+++A+GLIGAVIMPHNIYLHSALVLSR  DR  P  + EA KY+ IDS IALTV+F+INLAVV  FA  F+D  C+TA        G    LS    G CD     CQ IGL+ A DAL   LG +AKY+WAVGLL  G+
Sbjct: 1017 IDTFTFLGIHYFGVRKLESVFVLLVAIMTVCFFINFGKSPPPSRDIAEGFVPQIRPYAVLSAVGLIGAVIMPHNIYLHSALVLSRKVDRRRPAHVKEANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAP------GGPLACLSRTEEGVCD-----CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQ 1203          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S2Y3E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3E1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.480e-49
Identity = 97/204 (47.55%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPS------YGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            +D F FL +   GV+ LE  F+ LV ++TV F V++ I  P   +VAEGF   +  YA+V A+GL G+ +MPHN++LHSALVL+R  DR++P+K+ EA KY +IDSG+A+ V FLIN+ V+ +FA  FYD  C+ A   SAC + ++    + S       G CD G GVCQEIGLS A +AL+ +LG  AK +WA+GLL  G+
Sbjct:  202 IDAFAFLALRSCGVKLLEGFFISLVGMITVCFAVNYFIEAPPVEEVAEGFIPDMQGYAMVYAVGLFGSTVMPHNLFLHSALVLTRDIDRNDPRKIREANKYLSIDSGMAVFVTFLINITVIGSFAYNFYDPECAHAEVPSACVSNTAFHNEDASAQGIQVLGVCDGGQGVCQEIGLSMAGEALRESLGGNAKTLWAIGLLASGQ 405          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S3YUG6_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUG6_9EUKA)

HSP 1 Score: 172 bits (435), Expect = 2.000e-47
Identity = 104/209 (49.76%), Postives = 132/209 (63.16%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEG-FSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLS-ACFTGSSIDLSEPSY------GTC---DEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            LDTFTFL  H  G+RKLE++F  ++ VM V FF+++G S   A     G F  T+  YAL+ A+G +GAVIMPHNIYLHSALVLSR  DR +P K+WEA KY  I+SG+AL ++F IN AVV TF   F+++ C++    + AC    S  + E  Y       TC     G G C EIGLS A  AL  TLGSAAKY+W VG+L  G+
Sbjct:  162 LDTFTFLLFHYWGIRKLESVFCAMIFVMCVCFFINWGKSGTDAGQFMFGLFVPTIEDYALIPAVGTLGAVIMPHNIYLHSALVLSRKIDRRDPTKVWEAIKYNAIESGMALLISFFINAAVVVTFTTHFFNVGCASLEAGNFACVDTRSDGIPEDDYFNGISPDTCVNEHNGYGRCAEIGLSTAGHALGQTLGSAAKYIWGVGVLASGQ 370          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 1.000e-44
Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTA----STLSACFTGSSIDLSEPSYGTC---DEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            LDTFTFL +H  G+RKLEA FV L+ +M V FF +F      +  +  GF   +  YA+  A+G++GAVIMPHNI+LHSALV +R  D  N +K+ EA KY+ I+SG AL V+FLINLAV+  FAK F+   CS +       SAC  G + D    +YGTC   +  +G+CQ IGLS A  AL   LG  A+ +WAVGLL  G+
Sbjct:  191 LDTFTFLLLHRYGIRKLEAFFVSLIGIMLVCFFANFVRGGIDSEGILGGFVPEVQPYAVTQAVGILGAVIMPHNIFLHSALVQTRRIDHQNTRKVTEANKYFAIESGGALIVSFLINLAVLAVFAKGFFSPDCSASFDQFGVNSACVPGGAAD--GDTYGTCTLANGASGMCQSIGLSQAGSALSEMLGGYAEIIWAVGLLAAGQ 393          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S3YLW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLW2_HETAK)

HSP 1 Score: 162 bits (411), Expect = 5.680e-44
Identity = 95/201 (47.26%), Postives = 132/201 (65.67%), Query Frame = 1
Query:    4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPS--YGTCDE--GAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            D F FL +   G+R LEA F+ +V +M+  F ++F    P A ++  GF+  L  YA  TA+G++GAV+MPHN++LHSALVL+R  DR +  ++ +A KY  +DS I+L ++F+INLAV+ +FA  FY  +C+ AST+SAC     +D  EPS  YG C    GAG C E+GLS A D L  TLG+ AK +WAVGLL  G+
Sbjct:  149 DAFLFLGLKGFGIRPLEAFFMSMVGLMSATFLLNFARDAPPAGELLAGFAPLLRPYAAPTAVGVLGAVVMPHNLFLHSALVLTRGLDRRDQDQVRQALKYTYLDSAISLFISFVINLAVIGSFAYNFYSPTCARASTMSAC-VNHPLDGIEPSQLYGDCTNTLGAGQCMEVGLSQAGDVLGRTLGATAKALWAVGLLASGQ 348          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: K3X5J7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5J7_GLOUD)

HSP 1 Score: 162 bits (411), Expect = 5.940e-44
Identity = 99/205 (48.29%), Postives = 133/205 (64.88%), Query Frame = 1
Query:    1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTL----SACFTGSSIDLSEPSYGTCDEGAG---VCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            LDTFTFL +H  G+RKLEA FV L+++M V FFV+F        DVA GF   +  YA+  A+G++GAVIMPHNI+LHSALV +R  D  N +K+ EA KY+ I+SG AL V+FLINLAV+  F+K F+   C+++  +    SAC  G + D   P+YG C   +G   +CQ IGLS A  A+   LG  A+ +WA+GLL  G+
Sbjct:  192 LDTFTFLLLHRYGIRKLEAFFVALITIMLVCFFVNFVRGGIDTLDVATGFLPHVERYAVTQAVGILGAVIMPHNIFLHSALVQTRQVDPHNHRKVHEANKYFAIESGGALFVSFLINLAVLGVFSKGFFSPDCTSSYDVYGVNSACVPGGTAD--GPTYGHCALASGKQGMCQGIGLSQAGQAMSEMLGGYAEVIWAIGLLAAGQ 394          
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A6A3ILC1_9STRA (Metal transporter n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ILC1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.120e-43
Identity = 99/203 (48.77%), Postives = 126/203 (62.07%), Query Frame = 1
Query:    4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTA----STLSACFTGSSIDLSEPSYGTCD--EGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
            DT TFL +H  G+RKLEA FV L+ VM V F  +       + DVA GF   + SYA+  A+G++GAVIMPHNI+LHSALV SR  DR + +K+ EA KY+ I+SGIAL V+FLINLAV+  FAK F+   CS         +AC  G+  D    +YG C    G G+CQ IGLS A  AL G  G  +  +WA+GLL  G+
Sbjct:  170 DTLTFLLLHRYGIRKLEAFFVSLIVVMLVCFCANLVRGDVASVDVARGFVPRVESYAVTQAVGIVGAVIMPHNIFLHSALVQSRQVDRHDVRKVREANKYFAIESGIALFVSFLINLAVLAVFAKGFFSSDCSATFESDGLNTACVPGAGAD--GDAYGACHLTNGEGMCQPIGLSQAGIALNGMRGQYSDVIWAIGLLAAGQ 370          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF38_ECTSI7.130e-9679.40Divalent metal transporter n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZC9_9STRA3.160e-7062.44Divalent metal transporter n=1 Tax=Tribonema minus... [more]
A0A4D9D1G8_9STRA4.460e-5857.58Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TP25_9STRA1.570e-5557.582-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
A0A7S2Y3E1_9STRA5.480e-4947.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YUG6_9EUKA2.000e-4749.76Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A8K1CE46_PYTOL1.000e-4448.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3YLW2_HETAK5.680e-4447.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3X5J7_GLOUD5.940e-4448.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3ILC1_9STRA1.120e-4348.77Metal transporter n=3 Tax=Phytophthora TaxID=4783 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11206contigH-elongata_contig11206:6710..8440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.7
Seed ortholog evalue1e-78
Seed eggNOG ortholog2880.D8LF38
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,ko04142,ko04216,ko04978,map00500,map01100,map04142,map04216,map04978
EggNOG free text desc.transition metal ion homeostasis
EggNOG OGsCOG1914@1,KOG1291@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.P
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Hectar predicted targeting categorysignal anchor
Exons3
Model size596
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11206.979.1prot_H-elongata_contig11206.979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11206 6710..8440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.6301332-CDS-H-elongata_contig11206:6709..67571622929642.6301332-CDS-H-elongata_contig11206:6709..6757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 6710..6757 +
1691679102.803317-CDS-H-elongata_contig11206:6709..67571691679102.803317-CDS-H-elongata_contig11206:6709..6757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 6710..6757 +
1622929642.6470344-CDS-H-elongata_contig11206:7410..76531622929642.6470344-CDS-H-elongata_contig11206:7410..7653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 7411..7653 +
1691679102.82582-CDS-H-elongata_contig11206:7410..76531691679102.82582-CDS-H-elongata_contig11206:7410..7653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 7411..7653 +
1622929642.665689-CDS-H-elongata_contig11206:8137..84401622929642.665689-CDS-H-elongata_contig11206:8137..8440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 8138..8440 +
1691679102.845243-CDS-H-elongata_contig11206:8137..84401691679102.845243-CDS-H-elongata_contig11206:8137..8440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11206 8138..8440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11206.979.1

>prot_H-elongata_contig11206.979.1 ID=prot_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGF
SFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATK
YYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDL
SEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR
back to top

mRNA from alignment at H-elongata_contig11206:6710..8440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11206.979.1 ID=mRNA_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1731bp|location=Sequence derived from alignment at H-elongata_contig11206:6710..8440+ (Himanthalia elongata Himel1 dioecious)
TTGGATACATTCACCTTCCTTTTCATCCACGTCCTCGGTGTACGAAAGGT ATAGTAACGCTTCCTTGGTGGAACCCCCCCCCAGTATCAAAAACTGAGAG ACGGCAGCCAAGCCGTCTATGAGCTTAAACATACCACCTTTTACTCCTGA GGTGTTTTGTTTATGCCGCTGATATTCCAATGCTGATGTATCCAGCGCGC CCAGCAATAGACTCGTGCTATAGGTTAATGGCAAGTGGATGTAAGGTATG CTTTGGTGGGTTCGTCAGATACGGCATTGTTTTTCTACGCTTTGGAATGG CGGGAATGATGCATTTCGATTCGAGCGCGCGTTCCTGTTCGGGTTGCTCG CTTTCATGTCGCCCTGGAATACGTTTGCTTCCTTGCGAGCGCTCGCTCAC CCGTGGCGGCTGTCGATTGTCTACGGTAAATCGTGCGTAAGTTACACACC GGATTTACTGCCTGCTACAGAGAAATTGAAGCCCTCGATTCCAAAATGTA GCACGTATTTCTCTGCAGAGGTGAAGTCGAGAAGAGGGGTTTGAGGAGGG GGGGGGGCGTTTTTGGCGTGCCCCGGCGTCAAGAAAATGCCAGCATCCTC GTTGCCTCTGCCCTACTTTATTCCCGCATCCGCTATCGCAGTAACGTTTC TCTTTACGCACTCCTTCTGCCGGACATCCGCGCCCCGCCTCTCTTGCCCA GCTCGAGGCCCTATTCGTGTTTTTGGTGTCGGTGATGACGGTCGCGTTCT TTGTCGACTTCGGCATCAGCCCTCCGACTGCCTCAGATGTAGCGGAGGGA TTTTCATTCACCTTGCACTCCTACGCCCTGGTGACGGCCCTTGGCCTCAT AGGGGCGGTCATCATGCCTCACAACATTTACCTGCACTCGGCGCTGGTGC TCTCCCGTACGTTCGACCGCTCGAACCCTAAGAAGCTGTGGGAGGTGAGG GGGTGGGTACCGTCGTCCCGCCTTCTCTGTTCAGTTAATAGGGATATTCC TTCTGTTTTGAGGAAGTGTACAAGTACGCTTGGAGAAAAAAGGGTCGAAT CTCGTAAAAACCGAGATTCAGACTTAATCCTTTGTTGTCAAACTTTTTTT TTGTGGGTTCTAAATGTTTTGCCTCAAAAAGGAGAGTCTATGATGACCGG GTTGTGACGTCATTATGTGTACAGGTATATGTGCCCTTCGGGGAATCTTC CCGGCTTATTTTACCTCTGTTCAGATTCCCCCCCCCCCCCCCTTTTCCCC CCCCCCTCTTTGTCCAAAACCCCCCTCCCTCGGCCCCCCGGGGTCCCCCC TTCCCCTTCGGGGGTGGACCCTCTTTTCTTCCCGGCTCGCACTGTTGTAT TATTATGTACATGCTGTGTACAATACTCTGTGCCTGTTTCTTTGCCCTTG CATCTGTGTATTGACGCCTACCACACAGGCGACGAAGTACTACACCATCG ACAGCGGGATAGCGCTCACCGTAGCGTTCCTCATCAACTTGGCCGTTGTG TGCACCTTCGCCAAGCAGTTCTACGATATTTCTTGCTCTACGGCTTCCAC GCTCTCGGCATGCTTTACCGGCAGCTCGATCGATCTATCGGAACCGTCTT ACGGCACCTGTGACGAAGGGGCAGGGGTGTGCCAGGAGATCGGTCTCTCC GCGGCGGCGGATGCTCTCAAGGGGACGCTCGGGAGCGCGGCGAAATACGT CTGGGCCGTGGGTCTGCTGGTGAGAGGCCGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11206:6710..8440+

>mRNA_H-elongata_contig11206.979.1 ID=mRNA_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig11206:6710..8440+ (Himanthalia elongata Himel1 dioecious)
TTGGATACATTCACCTTCCTTTTCATCCACGTCCTCGGTGTACGAAAGTT
GGATACATTCACCTTCCTTTTCATCCACGTCCTCGGTGTACGAAAGCTCG
AGGCCCTATTCGTGTTTTTGGTGTCGGTGATGACGGTCGCGTTCTTTGTC
GACTTCGGCATCAGCCCTCCGACTGCCTCAGATGTAGCGGAGGGATTTTC
ATTCACCTTGCACTCCTACGCCCTGGTGACGGCCCTTGGCCTCATAGGGG
CGGTCATCATGCCTCACAACATTTACCTGCACTCGGCGCTGGTGCTCTCC
CGTACGTTCGACCGCTCGAACCCTAAGAAGCTGTGGGAGCTCGAGGCCCT
ATTCGTGTTTTTGGTGTCGGTGATGACGGTCGCGTTCTTTGTCGACTTCG
GCATCAGCCCTCCGACTGCCTCAGATGTAGCGGAGGGATTTTCATTCACC
TTGCACTCCTACGCCCTGGTGACGGCCCTTGGCCTCATAGGGGCGGTCAT
CATGCCTCACAACATTTACCTGCACTCGGCGCTGGTGCTCTCCCGTACGT
TCGACCGCTCGAACCCTAAGAAGCTGTGGGAGGCGACGAAGTACTACACC
ATCGACAGCGGGATAGCGCTCACCGTAGCGTTCCTCATCAACTTGGCCGT
TGTGTGCACCTTCGCCAAGCAGTTCTACGATATTTCTTGCTCTACGGCTT
CCACGCTCTCGGCATGCTTTACCGGCAGCTCGATCGATCTATCGGAACCG
TCTTACGGCACCTGTGACGAAGGGGCAGGGGTGTGCCAGGAGATCGGTCT
CTCCGCGGCGGCGGATGCTCTCAAGGGGACGCTCGGGAGCGCGGCGAAAT
ACGTCTGGGCCGTGGGTCTGCTGGTGAGAGGCCGTGCGACGAAGTACTAC
ACCATCGACAGCGGGATAGCGCTCACCGTAGCGTTCCTCATCAACTTGGC
CGTTGTGTGCACCTTCGCCAAGCAGTTCTACGATATTTCTTGCTCTACGG
CTTCCACGCTCTCGGCATGCTTTACCGGCAGCTCGATCGATCTATCGGAA
CCGTCTTACGGCACCTGTGACGAAGGGGCAGGGGTGTGCCAGGAGATCGG
TCTCTCCGCGGCGGCGGATGCTCTCAAGGGGACGCTCGGGAGCGCGGCGA
AATACGTCTGGGCCGTGGGTCTGCTGGTGAGAGGCCGT
back to top