mRNA_H-elongata_contig111869.966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111869.966.1
Unique NamemRNA_H-elongata_contig111869.966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A6H5KZ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ60_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.830e-35
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLDDP 210
            +SS QALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFL MI+LLNVCQGGLDDP
Sbjct:  133 NSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLAMIMLLNVCQGGLDDP 198
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: D7FP16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP16_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.880e-32
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLDDP 210
            +SS QALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFL MI+LLNVCQGGLDDP
Sbjct:  840 NSSDQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLAMIMLLNVCQGGLDDP 905
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A835YQB0_9STRA (Eukaryotic membrane protein family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.970e-26
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLDD 207
            +SS QALLTLLISNNFAEIKS+VFKKFDK NLFQLSCHD+VERFKL LFLGMI+LLN+  GG DD
Sbjct:  109 NSSDQALLTLLISNNFAEIKSAVFKKFDKQNLFQLSCHDIVERFKLILFLGMIMLLNIAHGG-DD 172
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7S1YQX4_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQX4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.700e-19
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLDD 207
            +S+ QALLTLLIS NFAEIKS+VFKK++K NLF+++  D+ ERFKLALFL ++LLLN  QGG+D 
Sbjct:  739 NSADQALLTLLISGNFAEIKSTVFKKYNKQNLFKITTSDICERFKLALFLSLVLLLNCFQGGMDQ 803
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7R9U9R0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9R0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.940e-19
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   28 ALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLD 204
            ALLT+LIS+NFAEIKS VFKKFDK N+FQL CHDVVERFKL LF+ +I LL+ C G L 
Sbjct:   34 ALLTVLISSNFAEIKSFVFKKFDKKNVFQLGCHDVVERFKLWLFMSLIGLLSWCNGSLQ 92
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7S3XZM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZM9_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 1.590e-18
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLD 204
            +SS ++L+ LLISNNF E+K SV KKFD+ NLFQL+C D+VERFKL LFL +I+LLN CQG  D
Sbjct:  114 NSSEKSLMALLISNNFNEMKGSVLKKFDRKNLFQLACADIVERFKLMLFLFLIVLLNYCQGMQD 177
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: W7TY90_9STRA (Tapt1 protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TY90_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-18
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLDD 207
            +S+ QALLTLLISNNFAE+KSSVFK+FD   LFQL+C D+VERFKL LFLG+I LLN  Q   ++
Sbjct:   64 NSADQALLTLLISNNFAEMKSSVFKRFDPKLLFQLTCSDMVERFKLLLFLGLITLLNFGQHAKEE 128
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7S1U4H5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4H5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.360e-18
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   28 ALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQGGLD 204
            ALLTLLIS+NFAEIKS VFKKFDK N+FQL CHD+VERFKL LF+ +I +L+ C G L 
Sbjct:  365 ALLTLLISSNFAEIKSFVFKKFDKKNVFQLGCHDIVERFKLWLFMTLIAILSWCNGTLQ 423
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BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7S2P706_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P706_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.290e-18
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQG 195
            +S+  AL++LL+S+NFAEIKS+VFKK+ K NLF ++  D+ ERFKL LFL +IL+LN+CQG
Sbjct:   18 NSADSALMSLLVSSNFAEIKSTVFKKYQKKNLFDITAADINERFKLLLFLILILILNICQG 78
[Close]
BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Match: A0A7S1DB00_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB00_CYCTE)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-17
Identity = 39/61 (63.93%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   13 DSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKLALFLGMILLLNVCQG 195
            +S+  ALLTLLIS NFAEIKS+VFKK+++ NLF+++  D+ ERFKLALFL ++L+LN+CQG
Sbjct:  103 NSADHALLTLLISGNFAEIKSTVFKKYNRPNLFKITASDICERFKLALFLMLVLVLNICQG 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111869.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ60_9PHAE3.830e-3593.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP16_ECTSI2.880e-3293.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQB0_9STRA1.970e-2683.08Eukaryotic membrane protein family-domain-containi... [more]
A0A7S1YQX4_9STRA2.700e-1966.15Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]
A0A7R9U9R0_9STRA2.940e-1972.88Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XZM9_HETAK1.590e-1865.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TY90_9STRA1.630e-1867.69Tapt1 protein n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S1U4H5_9STRA2.360e-1871.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2P706_9STRA9.290e-1860.66Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1DB00_CYCTE1.100e-1763.93Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111869contigH-elongata_contig111869:1804..2016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue7.3e-27
Seed eggNOG ortholog2880.D7FP16
Preferred nameTAPT1
GOsGO:0000003,GO:0001501,GO:0001503,GO:0001701,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006457,GO:0006935,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0008104,GO:0008150,GO:0009605,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009856,GO:0009888,GO:0009987,GO:0010154,GO:0010183,GO:0010638,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016020,GO:0016021,GO:0016520,GO:0022414,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031344,GO:0031346,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032507,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034975,GO:0035437,GO:0036064,GO:0038023,GO:0040011,GO:0042175,GO:0042221,GO:0042330,GO:0042995,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044706,GO:0045185,GO:0045724,GO:0048316,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048706,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048868,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051641,GO:0051651,GO:0051704,GO:0051716,GO:0060089,GO:0060485,GO:0060491,GO:0061035,GO:0061036,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071944,GO:0072595,GO:0098827,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1902017,GO:1902115,GO:1902117,GO:1903010,GO:1903012,GO:1904888,GO:2000026
EggNOG free text desc.positive regulation of bone development
EggNOG OGsKOG2490@1,KOG2490@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.6617837-CDS-H-elongata_contig111869:1803..20161622929641.6617837-CDS-H-elongata_contig111869:1803..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111869 1804..2016 -
1691679102.414131-CDS-H-elongata_contig111869:1803..20161691679102.414131-CDS-H-elongata_contig111869:1803..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111869 1804..2016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111869.966.1prot_H-elongata_contig111869.966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111869 1804..2016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111869.966.1

>prot_H-elongata_contig111869.966.1 ID=prot_H-elongata_contig111869.966.1|Name=mRNA_H-elongata_contig111869.966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
SLLPDSSRQALLTLLISNNFAEIKSSVFKKFDKHNLFQLSCHDVVERFKL
ALFLGMILLLNVCQGGLDDPM
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mRNA from alignment at H-elongata_contig111869:1804..2016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111869.966.1 ID=mRNA_H-elongata_contig111869.966.1|Name=mRNA_H-elongata_contig111869.966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig111869:1804..2016- (Himanthalia elongata Himel1 dioecious)
TCTTTGTTGCCCGACTCCTCCCGCCAGGCCTTGCTGACCCTCCTCATCTC
CAACAACTTCGCGGAGATCAAAAGCTCGGTTTTCAAGAAATTTGACAAGC
ACAACCTCTTCCAGCTGTCTTGTCACGACGTCGTCGAGCGCTTCAAGCTC
GCCCTGTTCCTCGGAATGATCCTCCTCCTCAATGTCTGCCAGGGGGGTCT
GGACGATCCCATG
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Coding sequence (CDS) from alignment at H-elongata_contig111869:1804..2016-

>mRNA_H-elongata_contig111869.966.1 ID=mRNA_H-elongata_contig111869.966.1|Name=mRNA_H-elongata_contig111869.966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig111869:1804..2016- (Himanthalia elongata Himel1 dioecious)
TCTTTGTTGCCCGACTCCTCCCGCCAGGCCTTGCTGACCCTCCTCATCTC
CAACAACTTCGCGGAGATCAAAAGCTCGGTTTTCAAGAAATTTGACAAGC
ACAACCTCTTCCAGCTGTCTTGTCACGACGTCGTCGAGCGCTTCAAGCTC
GCCCTGTTCCTCGGAATGATCCTCCTCCTCAATGTCTGCCAGGGGGGTCT
GGACGATCCCATGTCTTTGTTGCCCGACTCCTCCCGCCAGGCCTTGCTGA
CCCTCCTCATCTCCAACAACTTCGCGGAGATCAAAAGCTCGGTTTTCAAG
AAATTTGACAAGCACAACCTCTTCCAGCTGTCTTGTCACGACGTCGTCGA
GCGCTTCAAGCTCGCCCTGTTCCTCGGAATGATCCTCCTCCTCAATGTCT
GCCAGGGGGGTCTGGACGATCCCATG
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