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Homology
BLAST of mRNA_H-elongata_contig11186.965.1 vs. uniprot
Match: A0A6H5JI45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI45_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.820e-11 Identity = 73/184 (39.67%), Postives = 90/184 (48.91%), Query Frame = 1
Query: 1216 PSAVMLSPGTDSDRGSSLSPEKLPGVGIDTSVGGLEGED-------ESSEAEPKEEQHEVSGXXXXXXXXXESDSEMDETTRAEARTASISLSPQSAK--SAGSSMWLTPCFRGQGSFSAIRHEQEASKGGGGRDAPR-GRLAERAGKMRALGALDIMQVIGTISDSKSIDEAREARELSPRIR 1737
PS VMLSPGTDSD GSS SPE L GG G++ E A KEE+ E+ E T + +++SP SA S GS++W + F R S GG G D R G LA R+GKMRALG LD+MQV+GT SDS+S + + E SPR R
Sbjct: 1709 PSRVMLSPGTDSDPGSSPSPEVLVRRSSRPFSGGDAGQEGFAPHPQEEGAAAQKEEETEIGEGAQSAVTH--------EPTPSPDDVHGVTVSPPSASDSSLGSNLWCSGPF--------ARSTFGKSMGGQGADEARDGLLATRSGKMRALGTLDLMQVVGTFSDSESPSDDIDIEETSPRAR 1876
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1888 |
| Cds size | 1770 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929641.5285046-UTR-H-elongata_contig11186:1713..1765 | 1622929641.5285046-UTR-H-elongata_contig11186:1713..1765 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig11186 1714..1765 - |
| 1691679102.3332305-UTR-H-elongata_contig11186:1713..1765 | 1691679102.3332305-UTR-H-elongata_contig11186:1713..1765 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig11186 1714..1765 - |
| 1622929641.6126769-UTR-H-elongata_contig11186:5343..5409 | 1622929641.6126769-UTR-H-elongata_contig11186:5343..5409 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig11186 5344..5409 - |
| 1691679102.4021754-UTR-H-elongata_contig11186:5343..5409 | 1691679102.4021754-UTR-H-elongata_contig11186:5343..5409 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig11186 5344..5409 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929641.5392628-CDS-H-elongata_contig11186:1765..1939 | 1622929641.5392628-CDS-H-elongata_contig11186:1765..1939 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 1766..1939 - |
| 1691679102.343942-CDS-H-elongata_contig11186:1765..1939 | 1691679102.343942-CDS-H-elongata_contig11186:1765..1939 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 1766..1939 - |
| 1622929641.550176-CDS-H-elongata_contig11186:2308..2637 | 1622929641.550176-CDS-H-elongata_contig11186:2308..2637 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 2309..2637 - |
| 1691679102.3528411-CDS-H-elongata_contig11186:2308..2637 | 1691679102.3528411-CDS-H-elongata_contig11186:2308..2637 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 2309..2637 - |
| 1622929641.5652966-CDS-H-elongata_contig11186:2757..3733 | 1622929641.5652966-CDS-H-elongata_contig11186:2757..3733 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 2758..3733 - |
| 1691679102.3639977-CDS-H-elongata_contig11186:2757..3733 | 1691679102.3639977-CDS-H-elongata_contig11186:2757..3733 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 2758..3733 - |
| 1622929641.5803516-CDS-H-elongata_contig11186:4334..4519 | 1622929641.5803516-CDS-H-elongata_contig11186:4334..4519 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 4335..4519 - |
| 1691679102.3765507-CDS-H-elongata_contig11186:4334..4519 | 1691679102.3765507-CDS-H-elongata_contig11186:4334..4519 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 4335..4519 - |
| 1622929641.5912747-CDS-H-elongata_contig11186:5237..5343 | 1622929641.5912747-CDS-H-elongata_contig11186:5237..5343 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 5238..5343 - |
| 1691679102.3861418-CDS-H-elongata_contig11186:5237..5343 | 1691679102.3861418-CDS-H-elongata_contig11186:5237..5343 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig11186 5238..5343 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11186.965.1 >prot_H-elongata_contig11186.965.1 ID=prot_H-elongata_contig11186.965.1|Name=mRNA_H-elongata_contig11186.965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=590bp
MIVETARAQERRSMTNRTRGQHGGSGLSVLRNTWQGFMGGRDRGTIRQHC RASQSQGVSTWYRHSGSESTDTGLRPRLRQHPSATEGWESVPSSLGSGTG TGSISSASTSTARVSGDYLSYPTAASTESDLSLSEVFPAAVSPAGLAAAS ASSAADLFPSPTGHDAAADVFEESTAAGGSSSLSPSLSPSLSLSSDAFTS PRNDYTPTRNPNPRERDIPDTFGGRSPMAMVRPVPGRLKVAVAEAAAETA AEEEAKREGKRKAEEQGEARERSPRSGAISSPVEIDAARAEPLPMHGTSF PSRLAVPQGMPQAMAMLSPSSPIGDASSTRRGRGSSLAPATVELQPRLTF GDGSLRLRAGTVGRGRGRAREDAGRAGPTSSLSPSAVMLSPGTDSDRGSS LSPEKLPGVGIDTSVGGLEGEDESSEAEPKEEQHEVSGGDGDGESGRESD SEMDETTRAEARTASISLSPQSAKSAGSSMWLTPCFRGQGSFSAIRHEQE ASKGGGGRDAPRGRLAERAGKMRALGALDIMQVIGTISDSKSIDEAREAR ELSPRIRRTMSPRAQALIAEGRPTSPIHVVVPYTDAQTR* back to topmRNA from alignment at H-elongata_contig11186:1714..5409- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig11186.965.1 ID=mRNA_H-elongata_contig11186.965.1|Name=mRNA_H-elongata_contig11186.965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3696bp|location=Sequence derived from alignment at H-elongata_contig11186:1714..5409- (Himanthalia elongata Himel1 dioecious) CAGCAGGGTGGCGGTGGACAGGTTCAGGCACAACAAGACGAGGCGGTGGT
GGAGACTGCGAGAGAGATGATTGTAGAGACGGCCAGGGCGCAAGAACGGC
GGTCGATGACAAATCGCACGAGGGGACAACACGGTGGAAGCGGGCTGTCG
GTGCTGCGAAACACTTGGCAAGGTATGACTTGCGATGATTTTGTTTGATT
GATTTGGGATCTTGATATCTTCGTTTGAAATACTCGATGTCTTGATCTCT
TCTTGGCGCTGGCTAGGGTTAGGGTTAGGACATAGGGTTAGGGTTAAGGT
TAGACATGACTTGGACAACAAATTTGAAGTAGGGAGGATTTGGTAACCCT
AACCCTAACCTAACACGTTGAATGGTTGATTGGTCTACCCTACCCGACCC
TACCCTATCCCATCGGTAGAAACTAAAAATAGATAACTAGTCTATAGGTA
AATAGATCCGATGGTGTCGTAATGGATGGGGGTTAGGGTTAAGATAGACA
TATATCCACTATTTAATAGACGACCACACGAAAATTGGCGGCTGCGATTA
CGCTCTCCTTGTCTTACGATGTCTTATGCTCTATGCTATCCTATGCTCTA
TGCTCCTGATAAAAGTAGGCATCGTTAGTTTTTGATCGCTACCTAGTTTT
CATGCCAGGATAATATACATAATATAAAATAACATAATCGTCGAACTTTT
ACGTAGCAGCTAAAGCTCGTAATGGGCATGGCCGTGGCCGTGGCCGTCGA
CGCGCCAAACTCGCTCGAGGCAAAATAGTTGTAGTTACTCCCGGCGCCTG
ATTGTTAAGCTGCGGCCAACGTTCAACCCAACGAGAACATCGACTTAAAA
TATAACACAAGTACAACACCGATCGAACGTCGACCGGCAGGATTCATGGG
CGGGCGCGATCGAGGCACGATCAGGCAACATTGTCGCGCATCTCAATCTC
AAGGGGTGAGCACGTGGTATAGGCATAGTGGCTCGGAGTCGACGGATACA
GGCCTACGACCGCGGCTCCGGCAGCATCCTTCGGCGACCGAGGGCTGGGA
ATCCGTACCTTCTAGCTTGGGGTCGGTGAATAAATGGAAAATGGCCACAA
TGGCAGCACGTGCTGTGGTTAAGGTTAGGGTTAGGGTTTCCGTCAGACGC
CATCGTATGCATCGGGCGGGTACGTGAAATTTGTAATATGCTCGTTACTT
TCACAAACTGTCTCCCTTCTTCAAAGCAGATTTGGTGAAAATGCGGGGGA
CAATTGATCGTCAGATTCGAGTAGGTTCATTGAGATTTAGGATTATGGTT
ATGGTTGGGGATGAATTCCACAGTGATATGCATTTTCAAGCTAGAGACTG
CAGAGGAACACGTACGGATGAAATTTGATTAGAGGGTTAGGGTACTTACA
CCAATTATATTATACACGTATAGCTTGGGTCTCTCCCGAACGGGGGACAG
GGGAAAATAATTTTCCCTTTTTAATTATTTCATCCTGTTCAGCTGACCTT
GGGTAGGACTGGCAACCAAATCTGGTTGATCCATACTAAATCCTATATAC
TATAAAGGCGATATGCTATTAGTGATGGCTTCACACACTCACTGGACTGA
AACCAGTACCATACTGTATTGACTCATTTTATTCTTGTTAACGATTCAAT
TTCAACCCATTCTCCGAAATCCTCAGGGTACTGGCACTGGATCGATTTCT
AGCGCGTCAACCAGCACGGCGAGAGTTTCCGGCGATTACCTCAGCTACCC
CACGGCGGCCTCCACCGAGTCAGACTTGAGCCTGTCGGAGGTTTTCCCCG
CTGCCGTCAGCCCCGCAGGCCTCGCCGCTGCCTCTGCCTCTTCTGCAGCC
GACCTGTTTCCGTCCCCCACAGGTCACGATGCTGCTGCAGACGTGTTCGA
GGAAAGCACCGCGGCAGGAGGTTCATCATCATTATCGCCATCATTATCAC
CATCATTATCATTATCATCTGATGCCTTTACCTCGCCGAGGAATGACTAC
ACCCCCACCCGTAACCCTAACCCAAGAGAAAGAGACATCCCGGATACTTT
CGGGGGCAGGTCTCCCATGGCCATGGTGAGGCCCGTCCCTGGGAGACTTA
AGGTTGCTGTGGCTGAAGCGGCGGCGGAGACCGCGGCCGAGGAGGAAGCA
AAGCGAGAAGGAAAGAGAAAGGCAGAGGAGCAGGGGGAGGCCAGGGAACG
AAGTCCAAGGTCCGGAGCGATTTCCTCACCCGTTGAGATTGATGCGGCCA
GAGCAGAGCCGCTCCCGATGCACGGGACATCGTTTCCCTCTCGCCTCGCG
GTGCCTCAGGGGATGCCTCAGGCGATGGCGATGCTTTCCCCCAGCTCGCC
CATCGGGGATGCCTCTAGTACTCGCCGTGGCCGTGGTTCCTCCCTGGCAC
CGGCCACGGTGGAGTTACAGCCAAGGCTGACGTTCGGCGATGGATCGCTA
AGGCTTAGGGCCGGGACGGTCGGACGAGGAAGAGGAAGGGCTAGAGAAGA
TGCCGGCCGCGCGGGACCAACTTCCTCACTATCACCAAGCGCGGTGATGC
TTTCGCCTGGGACGGATTCGGATCGAGGGTCCTCGCTATCTCCAGAGAAG
CTTCCAGGCGTTGGAATTGATACTAGCGTTGGTGGCCTCGAAGGCGAAGA
CGGTGGACGAGGTAGGGCCATCGCCCAGGAGAAGAGGCAAGGGAGAGGGC
AGGGGACTGCACTGCCCGACCAACCGACGGGAGAAGGTGAGCGTTTCATG
CCGCAGTGGACCGTGACTCAAGAGAGCAGCGAGGCGGAGCCCAAAGAGGA
GCAACATGAGGTCTCGGGCGGCGATGGTGATGGCGAGAGCGGTCGGGAAA
GTGACTCCGAAATGGACGAGACAACTCGGGCAGAAGCGCGAACGGCCAGC
ATATCGTTGTCCCCCCAGTCCGCAAAGAGTGCCGGCAGCAGCATGTGGCT
AACGCCTTGCTTTCGTGGACAGGGCAGCTTTTCTGCGATACGACATGAGC
AGGAGGCGTCGAAGGGAGGGGGAGGGAGGGATGCGCCAAGAGGACGGTTG
GCGGAGAGGGCGGGAAAGATGAGGGCCTTGGGTGCCCTGGACATTATGCA
GGTGACTAGAAAATATACTGGGTTGGGTTATAGGGCCATAGGGTAATGAT
GGTCCGTCCGTTAATGTAGCACGTGTACCGGTTTTAAGTATTGAGTCTCA
CATCGACACAACACGCCGGATTTTATTATATAGTGCAATACTGTATAGTA
TAGGGAGATAGATCATTTATGCTGTTATTCCGGTACACATTTGTACCGCA
CCGCACCGCACCGCTGTATTTTCGGAAAAACTCAAGCGGCGTTGTTGTGA
TGTATGACCAAATAATCTTATGTTTGTGTTTGCTTCTATCTGTTGATTTC
GACCGTCGTCTTGTTAACCCGACTTTTCCGTGTGGTGGCGTTTTTCCTTT
TATGTCCATCTTATGTCCAGGTCATCGGAACTATTTCCGATTCCAAAAGT
ATAGACGAGGCGAGAGAGGCAAGAGAGCTGTCACCGCGAATAAGACGGAC
AATGTCACCGCGGGCGCAAGCTCTAATAGCCGAGGGCCGGCCCACCTCCC
CGATCCACGTGGTTGTACCCTATACGGACGCTCAGACCCGGTGACCCTTA
CCCAACATCCAAGCAGTGCGGGTTAGCGCTCCAGTGACGCCAGAGG back to topCoding sequence (CDS) from alignment at H-elongata_contig11186:1714..5409- >mRNA_H-elongata_contig11186.965.1 ID=mRNA_H-elongata_contig11186.965.1|Name=mRNA_H-elongata_contig11186.965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3540bp|location=Sequence derived from alignment at H-elongata_contig11186:1714..5409- (Himanthalia elongata Himel1 dioecious) ATGATTGTAGAGACGGCCAGGGCGCAAGAACGGCGGTCGATGACAAATCG CACGAGGGGACAACACGGTGGAAGCGGGCTGTCGGTGCTGCGAAACACTT GGCAAGATGATTGTAGAGACGGCCAGGGCGCAAGAACGGCGGTCGATGAC AAATCGCACGAGGGGACAACACGGTGGAAGCGGGCTGTCGGTGCTGCGAA ACACTTGGCAAGGATTCATGGGCGGGCGCGATCGAGGCACGATCAGGCAA CATTGTCGCGCATCTCAATCTCAAGGGGTGAGCACGTGGTATAGGCATAG TGGCTCGGAGTCGACGGATACAGGCCTACGACCGCGGCTCCGGCAGCATC CTTCGGCGACCGAGGGCTGGGAATCCGTACCTTCTAGCTTGGGGTCGGAT TCATGGGCGGGCGCGATCGAGGCACGATCAGGCAACATTGTCGCGCATCT CAATCTCAAGGGGTGAGCACGTGGTATAGGCATAGTGGCTCGGAGTCGAC GGATACAGGCCTACGACCGCGGCTCCGGCAGCATCCTTCGGCGACCGAGG GCTGGGAATCCGTACCTTCTAGCTTGGGGTCGGGTACTGGCACTGGATCG ATTTCTAGCGCGTCAACCAGCACGGCGAGAGTTTCCGGCGATTACCTCAG CTACCCCACGGCGGCCTCCACCGAGTCAGACTTGAGCCTGTCGGAGGTTT TCCCCGCTGCCGTCAGCCCCGCAGGCCTCGCCGCTGCCTCTGCCTCTTCT GCAGCCGACCTGTTTCCGTCCCCCACAGGTCACGATGCTGCTGCAGACGT GTTCGAGGAAAGCACCGCGGCAGGAGGTTCATCATCATTATCGCCATCAT TATCACCATCATTATCATTATCATCTGATGCCTTTACCTCGCCGAGGAAT GACTACACCCCCACCCGTAACCCTAACCCAAGAGAAAGAGACATCCCGGA TACTTTCGGGGGCAGGTCTCCCATGGCCATGGTGAGGCCCGTCCCTGGGA GACTTAAGGTTGCTGTGGCTGAAGCGGCGGCGGAGACCGCGGCCGAGGAG GAAGCAAAGCGAGAAGGAAAGAGAAAGGCAGAGGAGCAGGGGGAGGCCAG GGAACGAAGTCCAAGGTCCGGAGCGATTTCCTCACCCGTTGAGATTGATG CGGCCAGAGCAGAGCCGCTCCCGATGCACGGGACATCGTTTCCCTCTCGC CTCGCGGTGCCTCAGGGGATGCCTCAGGCGATGGCGATGCTTTCCCCCAG CTCGCCCATCGGGGATGCCTCTAGTACTCGCCGTGGCCGTGGTTCCTCCC TGGCACCGGCCACGGTGGAGTTACAGCCAAGGCTGACGTTCGGCGATGGA TCGCTAAGGCTTAGGGCCGGGACGGTCGGACGAGGAAGAGGAAGGGCTAG AGAAGATGCCGGCCGCGCGGGACCAACTTCCTCACTATCACCAAGCGCGG TGATGCTTTCGCCTGGGACGGATTCGGATCGAGGGTCCTCGCTATCTCCA GAGAAGCTTCCAGGCGTTGGAATTGATACTAGCGTTGGTGGCCTCGAAGG CGAAGACGGGTACTGGCACTGGATCGATTTCTAGCGCGTCAACCAGCACG GCGAGAGTTTCCGGCGATTACCTCAGCTACCCCACGGCGGCCTCCACCGA GTCAGACTTGAGCCTGTCGGAGGTTTTCCCCGCTGCCGTCAGCCCCGCAG GCCTCGCCGCTGCCTCTGCCTCTTCTGCAGCCGACCTGTTTCCGTCCCCC ACAGGTCACGATGCTGCTGCAGACGTGTTCGAGGAAAGCACCGCGGCAGG AGGTTCATCATCATTATCGCCATCATTATCACCATCATTATCATTATCAT CTGATGCCTTTACCTCGCCGAGGAATGACTACACCCCCACCCGTAACCCT AACCCAAGAGAAAGAGACATCCCGGATACTTTCGGGGGCAGGTCTCCCAT GGCCATGGTGAGGCCCGTCCCTGGGAGACTTAAGGTTGCTGTGGCTGAAG CGGCGGCGGAGACCGCGGCCGAGGAGGAAGCAAAGCGAGAAGGAAAGAGA AAGGCAGAGGAGCAGGGGGAGGCCAGGGAACGAAGTCCAAGGTCCGGAGC GATTTCCTCACCCGTTGAGATTGATGCGGCCAGAGCAGAGCCGCTCCCGA TGCACGGGACATCGTTTCCCTCTCGCCTCGCGGTGCCTCAGGGGATGCCT CAGGCGATGGCGATGCTTTCCCCCAGCTCGCCCATCGGGGATGCCTCTAG TACTCGCCGTGGCCGTGGTTCCTCCCTGGCACCGGCCACGGTGGAGTTAC AGCCAAGGCTGACGTTCGGCGATGGATCGCTAAGGCTTAGGGCCGGGACG GTCGGACGAGGAAGAGGAAGGGCTAGAGAAGATGCCGGCCGCGCGGGACC AACTTCCTCACTATCACCAAGCGCGGTGATGCTTTCGCCTGGGACGGATT CGGATCGAGGGTCCTCGCTATCTCCAGAGAAGCTTCCAGGCGTTGGAATT GATACTAGCGTTGGTGGCCTCGAAGGCGAAGACGAGAGCAGCGAGGCGGA GCCCAAAGAGGAGCAACATGAGGTCTCGGGCGGCGATGGTGATGGCGAGA GCGGTCGGGAAAGTGACTCCGAAATGGACGAGACAACTCGGGCAGAAGCG CGAACGGCCAGCATATCGTTGTCCCCCCAGTCCGCAAAGAGTGCCGGCAG CAGCATGTGGCTAACGCCTTGCTTTCGTGGACAGGGCAGCTTTTCTGCGA TACGACATGAGCAGGAGGCGTCGAAGGGAGGGGGAGGGAGGGATGCGCCA AGAGGACGGTTGGCGGAGAGGGCGGGAAAGATGAGGGCCTTGGGTGCCCT GGACATTATGCAGAGAGCAGCGAGGCGGAGCCCAAAGAGGAGCAACATGA GGTCTCGGGCGGCGATGGTGATGGCGAGAGCGGTCGGGAAAGTGACTCCG AAATGGACGAGACAACTCGGGCAGAAGCGCGAACGGCCAGCATATCGTTG TCCCCCCAGTCCGCAAAGAGTGCCGGCAGCAGCATGTGGCTAACGCCTTG CTTTCGTGGACAGGGCAGCTTTTCTGCGATACGACATGAGCAGGAGGCGT CGAAGGGAGGGGGAGGGAGGGATGCGCCAAGAGGACGGTTGGCGGAGAGG GCGGGAAAGATGAGGGCCTTGGGTGCCCTGGACATTATGCAGGTCATCGG AACTATTTCCGATTCCAAAAGTATAGACGAGGCGAGAGAGGCAAGAGAGC TGTCACCGCGAATAAGACGGACAATGTCACCGCGGGCGCAAGCTCTAATA GCCGAGGGCCGGCCCACCTCCCCGATCCACGTGGTTGTACCCTATACGGA CGCTCAGACCCGGTGAGTCATCGGAACTATTTCCGATTCCAAAAGTATAG ACGAGGCGAGAGAGGCAAGAGAGCTGTCACCGCGAATAAGACGGACAATG TCACCGCGGGCGCAAGCTCTAATAGCCGAGGGCCGGCCCACCTCCCCGAT CCACGTGGTTGTACCCTATACGGACGCTCAGACCCGGTGA back to top
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