mRNA_H-elongata_contig111829.963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111829.963.1
Unique NamemRNA_H-elongata_contig111829.963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A6H5KU22_9PHAE (UAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU22_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.040e-20
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQ 144
            RQAAKQQKK LLVN+Q++ EFDCHRLNRDVWKDE ++NI+EC CIFWQ
Sbjct:  215 RQAAKQQKKWLLVNIQTEAEFDCHRLNRDVWKDEMIQNIIECNCIFWQ 262
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: D7FS95_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS95_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.080e-20
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQ 144
            RQAAKQQKK LLVN+Q++ EFDCHRLNRDVWKDE V+NI+EC CIFWQ
Sbjct:  215 RQAAKQQKKWLLVNIQTEAEFDCHRLNRDVWKDEMVQNIIECNCIFWQ 262
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A835ZJ55_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ55_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.660e-13
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQASAATP 162
            R  AK Q K LLVN+Q D EF CH LNRD WKDETV+ +V C C FWQ     P
Sbjct:  182 RAEAKAQGKMLLVNIQDDTEFACHMLNRDTWKDETVQEMVTCTCTFWQMLRTAP 235
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A7R9WZM8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZM8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.510e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQA 147
            R  A+  K+ LLVN+Q D EF CH LNRDVW+DE VEN++    +FWQ+
Sbjct:   51 RNMARDNKRWLLVNLQRDNEFSCHALNRDVWRDELVENLIREGFVFWQS 99
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A1Z5JIC2_FISSO (UBX domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIC2_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 5.170e-12
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQASAATP 162
            R  AK  K+ LLVN+Q D EF CH LNRDVW+DE VEN++    IFWQ    TP
Sbjct:  180 RTMAKDSKRWLLVNIQKDDEFACHALNRDVWRDELVENLIREGFIFWQQRDITP 233
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A448ZGM6_9STRA (UBX domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGM6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-11
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQASAATP 162
            R +A+  K+ LLVN+Q D EF CH LNRDVW+DE VEN++    +FWQ    TP
Sbjct:  210 RASARDSKRWLLVNLQRDSEFSCHALNRDVWRDELVENLIGDGFVFWQEFDTTP 263
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BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A1E7FEE8_9STRA (UBX domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEE8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-11
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQASAAT 159
            R  AK  K+ LLVN+Q D EF CH LNRDVW+DE VEN++    IFWQ   AT
Sbjct:  196 RAMAKDSKRWLLVNIQRDNEFSCHALNRDVWRDELVENLIGEGFIFWQKFDAT 248
[Close]
BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A7S4JAM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAM1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQAS 150
            R  A+  ++ LLVN+Q D +F CH LNRDVW+DE VEN+V    +FWQA+
Sbjct:  104 RNVARDARRWLLVNLQRDSDFACHALNRDVWRDELVENLVREGFVFWQAT 153
[Close]
BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: K0RPX8_THAOC (UBX domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RPX8_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 1.580e-10
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQA 147
            +  AK  ++ LLVN+QSD +F CH LNRDVW+DE VEN+V    I WQA
Sbjct:   78 KNVAKDARRWLLVNIQSDSDFACHALNRDVWRDELVENLVREGFILWQA 126
[Close]
BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Match: A0A7S3L2W8_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2W8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.620e-10
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQASAATP 162
            RQ AK  K+ LLVN+Q D EF  H LNRDVW+++ VEN++    IFWQ    +P
Sbjct:  194 RQVAKDSKRWLLVNIQKDSEFSSHALNRDVWRNDLVENLIREGFIFWQEMDVSP 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111829.963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU22_9PHAE2.040e-2079.17UAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS95_ECTSI2.080e-2081.25UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZJ55_9STRA1.660e-1359.26UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7R9WZM8_9STRA3.510e-1255.10Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5JIC2_FISSO5.170e-1257.41UBX domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A448ZGM6_9STRA1.330e-1153.70UBX domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A1E7FEE8_9STRA1.330e-1158.49UBX domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4JAM1_9STRA1.390e-1054.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
K0RPX8_THAOC1.580e-1057.14UBX domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3L2W8_9STRA1.620e-1051.85Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111829contigH-elongata_contig111829:870..1035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue9e-17
Seed eggNOG ortholog2880.D7FS95
Preferred nameUBXN7
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030674,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0060090,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG1364@1,KOG1364@2759
EC1.1.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.337636-CDS-H-elongata_contig111829:870..10351622929641.337636-CDS-H-elongata_contig111829:870..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111829 871..1035 -
1691679102.2842827-CDS-H-elongata_contig111829:870..10351691679102.2842827-CDS-H-elongata_contig111829:870..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111829 871..1035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111829.963.1prot_H-elongata_contig111829.963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111829 871..1035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111829.963.1

>prot_H-elongata_contig111829.963.1 ID=prot_H-elongata_contig111829.963.1|Name=mRNA_H-elongata_contig111829.963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RQAAKQQKKCLLVNVQSDGEFDCHRLNRDVWKDETVENIVECKCIFWQAS
AATPH
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mRNA from alignment at H-elongata_contig111829:870..1035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111829.963.1 ID=mRNA_H-elongata_contig111829.963.1|Name=mRNA_H-elongata_contig111829.963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=166bp|location=Sequence derived from alignment at H-elongata_contig111829:870..1035- (Himanthalia elongata Himel1 dioecious)
CGGCAGGCGGCTAAGCAGCAGAAGAAGTGCCTTCTCGTAAACGTGCAGTC
GGACGGTGAGTTCGACTGCCATCGCCTCAACAGGGACGTGTGGAAAGATG
AAACCGTCGAGAACATCGTGGAGTGCAAGTGCATCTTCTGGCAGGCAAGC
GCCGCCACTCCTCATC
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Coding sequence (CDS) from alignment at H-elongata_contig111829:870..1035-

>mRNA_H-elongata_contig111829.963.1 ID=mRNA_H-elongata_contig111829.963.1|Name=mRNA_H-elongata_contig111829.963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig111829:870..1035- (Himanthalia elongata Himel1 dioecious)
CGGCAGGCGGCTAAGCAGCAGAAGAAGTGCCTTCTCGTAAACGTGCAGTC
GGACGGTGAGTTCGACTGCCATCGCCTCAACAGGGACGTGTGGAAAGATG
AAACCGTCGAGAACATCGTGGAGTGCAAGTGCATCTTCTGGCAGGCAAGC
GCCGCCACTCCTCATCGGCAGGCGGCTAAGCAGCAGAAGAAGTGCCTTCT
CGTAAACGTGCAGTCGGACGGTGAGTTCGACTGCCATCGCCTCAACAGGG
ACGTGTGGAAAGATGAAACCGTCGAGAACATCGTGGAGTGCAAGTGCATC
TTCTGGCAGGCAAGCGCCGCCACTCCTCAT
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