mRNA_H-elongata_contig111816.960.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111816.960.1
Unique NamemRNA_H-elongata_contig111816.960.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A2H4YKK3_9PHAE (Amine oxidase n=6 Tax=Sargassum TaxID=3015 RepID=A0A2H4YKK3_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 5.450e-129
Identity = 188/220 (85.45%), Postives = 201/220 (91.36%), Query Frame = 1
Query:    1 MVCYGKIIVVACFAENVVSAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            MV YGK +VV C A N+VSAFVP +F    G+  A S+R RGR G  SMIFDYPAPGVRKDYPRPPLE+TSQNQRE+AAFSQ F++MPRPSRPLKVAVIGAGLAGLSCAKYLSDAGH P+VLEARDVLGGKVAAWQDKDGDW+ETGLHIFFGAYPNVNQ+FTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRF+FPDLLPAPLNGLVAILLNNEMLT
Sbjct:    1 MVYYGKAVVVGCLAGNLVSAFVPITFV---GTGSAGSSRLRGRSGALSMIFDYPAPGVRKDYPRPPLEDTSQNQREAAAFSQTFINMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHNPVVLEARDVLGGKVAAWQDKDGDWIETGLHIFFGAYPNVNQMFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFDFPDLLPAPLNGLVAILLNNEMLT 217          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A2H4YKI9_9PHAE (Amine oxidase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A2H4YKI9_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 6.520e-125
Identity = 182/216 (84.26%), Postives = 194/216 (89.81%), Query Frame = 1
Query:   13 GKIIVVACFAENVVSAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            G + V    A N+ SAF+PS  TV  G+  ++  R   R GVSSMIFDYPAPGVRKDYPRPPLEETSQNQR+SAAFSQ F+DMPRP RPLKVAVIGAGLAGLSCAKYLSDAGH+P+VLEARDVLGGKVAAWQDKDGDW+ETGLHIFFGAYPNVNQ+FTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT
Sbjct:    5 GNVFVALALAGNLASAFMPSCVTVFRGAD-SLRARTHSRNGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRDSAAFSQAFVDMPRPDRPLKVAVIGAGLAGLSCAKYLSDAGHEPVVLEARDVLGGKVAAWQDKDGDWIETGLHIFFGAYPNVNQMFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 219          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A2H4YKJ4_SACJA (Amine oxidase n=2 Tax=Laminariales TaxID=2886 RepID=A0A2H4YKJ4_SACJA)

HSP 1 Score: 366 bits (939), Expect = 7.230e-122
Identity = 181/216 (83.80%), Postives = 191/216 (88.43%), Query Frame = 1
Query:   13 GKIIVVACFAENVVSAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            G   V+   A  +  AFVPSS TV  G+   V   R+ +  V SMIFDYPAPGVRKDYPRPPLEETSQNQR+SAAFSQ F+DMPRP RPLKVAVIGAGLAGLSCAKYLSDAGH+PIVLEARDVLGGKVAAWQDKDGDW+ETGLHIFFGAYPNVNQ+FTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT
Sbjct:    6 GDAFVLLMLAGKMALAFVPSSLTVFRGTAPLV-VGRQSKTSVPSMIFDYPAPGVRKDYPRPPLEETSQNQRDSAAFSQTFIDMPRPERPLKVAVIGAGLAGLSCAKYLSDAGHEPIVLEARDVLGGKVAAWQDKDGDWIETGLHIFFGAYPNVNQMFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 220          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: D8LPN3_ECTSI (Amine oxidase n=8 Tax=Phaeophyceae TaxID=2870 RepID=D8LPN3_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 1.870e-117
Identity = 178/209 (85.17%), Postives = 185/209 (88.52%), Query Frame = 1
Query:   40 AENVVSAFVPSSFTVSHGSPRAVSTRRRG--RRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            A   +SAFV    T   G   + S R+    R GVSSMIFD+PAPG RKDYPRPPLEETS+NQRESAAFSQ FLDMPRP RPLKVAVIGAGLAGLSCAKYLSDAGHKP+VLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQ+FTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFP LLPAPLNGLVAILLNNEMLT
Sbjct:   15 AGKTISAFVLPPATSFTGVGLSGSARQSAIRRNGVSSMIFDFPAPGERKDYPRPPLEETSENQRESAAFSQAFLDMPRPERPLKVAVIGAGLAGLSCAKYLSDAGHKPVVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQMFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPALLPAPLNGLVAILLNNEMLT 223          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A2H4YKJ3_9PHAE (Amine oxidase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A2H4YKJ3_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 3.220e-112
Identity = 167/203 (82.27%), Postives = 181/203 (89.16%), Query Frame = 1
Query:   55 SAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLTL 663
            + FV SS T+  G+        R R GV+SMIFDYPAPGVRKDYPRPPLEETSQNQR+SAAFS+ FL++PRP RPLKVAVIGAGLAGLSCAKYLSDAGH+P+VLEARDVLGGKV+AWQDKDGDWVETGLHIFFGAYPNVNQ+F EL I DRLQWKSHSMIFAMPGQ+TA+GFQRFSRFEF DLLPAPLNGLVAILLN EMLTL
Sbjct:   20 NGFVSSSTTLRKGTAPP-GAGARSRNGVTSMIFDYPAPGVRKDYPRPPLEETSQNQRDSAAFSRSFLELPRPERPLKVAVIGAGLAGLSCAKYLSDAGHQPLVLEARDVLGGKVSAWQDKDGDWVETGLHIFFGAYPNVNQMFKELDIEDRLQWKSHSMIFAMPGQKTAEGFQRFSRFEFTDLLPAPLNGLVAILLNTEMLTL 221          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A2H4YKJ7_9PHAE (Amine oxidase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A2H4YKJ7_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 6.680e-107
Identity = 160/189 (84.66%), Postives = 170/189 (89.95%), Query Frame = 1
Query:  100 RAVSTRRRGRR--GVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            R+   R R RR  GVSSMIFDYP  GVRKDYPRPPLEETSQNQR++A+FSQ   D+PR  RPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKV+AWQDKDGDWVETGLHIFFGAYPNVNQ+F EL I DRLQWKSHSMIFAMPGQQT DGFQRFSRF+FP LLPAPLNGLVAILLNN+ML+
Sbjct:   36 RSAVARTRARRADGVSSMIFDYPPQGVRKDYPRPPLEETSQNQRDAASFSQAIADLPRTERPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVSAWQDKDGDWVETGLHIFFGAYPNVNQMFKELDIEDRLQWKSHSMIFAMPGQQTEDGFQRFSRFDFPALLPAPLNGLVAILLNNDMLS 224          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A835Z8Q9_9STRA (15-cis-phytoene desaturase, chloroplastic/chromoplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q9_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.300e-94
Identity = 135/169 (79.88%), Postives = 152/169 (89.94%), Query Frame = 1
Query:  154 DYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            DYPAPGVR+D+PRPPLEETS+NQR SA  S+    +PRP +PLKVA+IGAGLAGLS AKYL+DAGH+P + E+RDVLGGKV+AWQD DGDWVETGLHIFFGAYPNVNQ+F ELGI DRLQWKSHSMIFAMPGQQTA+GFQRFSRFEFP  LPAP+NG+ AIL+NNEMLT
Sbjct:   14 DYPAPGVRRDFPRPPLEETSENQRASAQLSEYIKSLPRPEKPLKVAIIGAGLAGLSTAKYLTDAGHEPTIYESRDVLGGKVSAWQDADGDWVETGLHIFFGAYPNVNQMFKELGIEDRLQWKSHSMIFAMPGQQTAEGFQRFSRFEFPQFLPAPINGIAAILMNNEMLT 182          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: W7TCB4_9STRA (Amine oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCB4_9STRA)

HSP 1 Score: 254 bits (649), Expect = 4.010e-78
Identity = 129/210 (61.43%), Postives = 151/210 (71.90%), Query Frame = 1
Query:   34 CFAENVVSAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVI-GAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            CF+        P S    HG  R  ST R      ++ + DYP PG R+DYPRP LEETS + + +   S++    PRP       VI GAGLAGLS AKYL DAG KPIVLEARDVLGGKV+AWQDKDGDW+ETGLHIFFGAYPN+ ++F EL I +RLQWKSHSMIFAMPG+Q A+G QRFSRF+FP  LPAP NG++AILLN+EMLT
Sbjct:   17 CFSVQAFIPQTPLSELARHGRSRQSSTSRLVP--SANFLVDYPPPGERRDYPRPNLEETSSSFKIAEQLSEEIKKFPRPKEGKPTVVIAGAGLAGLSTAKYLCDAGFKPIVLEARDVLGGKVSAWQDKDGDWIETGLHIFFGAYPNMMRLFKELKIEERLQWKSHSMIFAMPGKQDAEGRQRFSRFDFPSFLPAPFNGILAILLNDEMLT 224          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A7S2RK35_9STRA (Amine oxidase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK35_9STRA)

HSP 1 Score: 241 bits (616), Expect = 5.740e-73
Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1
Query:  157 YPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLTL 663
            +PAPG ++DYPRP LEETS N RE++  S+    MPRP+   +V VIG GLAGLS AK+L DAGH+P+V+EARDVLGGKVAAWQD+DGDW ETGLHIFFGAYPN+ ++F +L I DRLQWKSHSMIFAMPGQ+  +G Q+FSRF+F +L PAPLNG++AIL NN+MLTL
Sbjct:   58 WPAPGEQRDYPRPNLEETSPNFREASEASEAIKQMPRPTEKKRVVVIGGGLAGLSTAKHLVDAGHEPLVIEARDVLGGKVAAWQDEDGDWTETGLHIFFGAYPNMMKLFKDLDIEDRLQWKSHSMIFAMPGQRDDNGDQKFSRFDFEEL-PAPLNGVLAILGNNDMLTL 225          
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Match: A0A397YCI1_BRACM (Amino_oxidase domain-containing protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A397YCI1_BRACM)

HSP 1 Score: 228 bits (582), Expect = 4.660e-72
Identity = 117/183 (63.93%), Postives = 134/183 (73.22%), Query Frame = 1
Query:  112 TRRRGRRGVSSMIFDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIGAGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIFFGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPDLLPAPLNGLVAILLNNEMLT 660
            TR R RR    +        V  D PRP LE T  N  E+A+ S  F   PRP++PLKV + GAGLAGLS AKYL+DAGHKP++LEARDVLGGK+AAW+D+DGDW ETGLHIFFGAYPNV  +F ELGI DRLQWK HSMIFAMP +        FSRF+FPD+LPAPLNG+ AIL NNEMLT
Sbjct:   43 TRTRRRRSAGPLQV------VCVDIPRPELENTV-NFLEAASLSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPG-----EFSRFDFPDVLPAPLNGIWAILRNNEMLT 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111816.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H4YKK3_9PHAE5.450e-12985.45Amine oxidase n=6 Tax=Sargassum TaxID=3015 RepID=A... [more]
A0A2H4YKI9_9PHAE6.520e-12584.26Amine oxidase n=1 Tax=Desmarestia viridis TaxID=62... [more]
A0A2H4YKJ4_SACJA7.230e-12283.80Amine oxidase n=2 Tax=Laminariales TaxID=2886 RepI... [more]
D8LPN3_ECTSI1.870e-11785.17Amine oxidase n=8 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A2H4YKJ3_9PHAE3.220e-11282.27Amine oxidase n=1 Tax=Dictyopteris undulata TaxID=... [more]
A0A2H4YKJ7_9PHAE6.680e-10784.66Amine oxidase n=1 Tax=Ishige okamurae TaxID=233772... [more]
A0A835Z8Q9_9STRA5.300e-9479.8815-cis-phytoene desaturase, chloroplastic/chromopl... [more]
W7TCB4_9STRA4.010e-7861.43Amine oxidase n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S2RK35_9STRA5.740e-7368.64Amine oxidase n=1 Tax=Rhizochromulina marina TaxID... [more]
A0A397YCI1_BRACM4.660e-7263.93Amino_oxidase domain-containing protein n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111816contigH-elongata_contig111816:757..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.3
Seed ortholog evalue1e-95
Seed eggNOG ortholog2880.D8LPN3
Preferred namePDS1
KEGG rclassRC01214,RC01958,RC03092,RC03093
KEGG koko:K02293
KEGG ReactionR04786,R04787,R07510,R09652,R09653,R09654
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016166,GO:0016491,GO:0016627,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0055114,GO:0071704,GO:1901576
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
EC1.3.5.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPhytoene desaturase, chloroplast precursor
Ec32 orthologEc-18_001850.1
Exons3
Model size666
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111816.960.1prot_H-elongata_contig111816.960.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111816 757..1966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.9808724-CDS-H-elongata_contig111816:756..8501622929640.9808724-CDS-H-elongata_contig111816:756..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 757..850 +
1691679102.1403654-CDS-H-elongata_contig111816:756..8501691679102.1403654-CDS-H-elongata_contig111816:756..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 757..850 +
1622929640.99869-CDS-H-elongata_contig111816:1048..13231622929640.99869-CDS-H-elongata_contig111816:1048..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 1049..1323 +
1691679102.1550567-CDS-H-elongata_contig111816:1048..13231691679102.1550567-CDS-H-elongata_contig111816:1048..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 1049..1323 +
1622929641.0108924-CDS-H-elongata_contig111816:1669..19661622929641.0108924-CDS-H-elongata_contig111816:1669..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 1670..1966 +
1691679102.1648488-CDS-H-elongata_contig111816:1669..19661691679102.1648488-CDS-H-elongata_contig111816:1669..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111816 1670..1966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111816.960.1

>prot_H-elongata_contig111816.960.1 ID=prot_H-elongata_contig111816.960.1|Name=mRNA_H-elongata_contig111816.960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
MVCYGKIIVVACFAENVVSAFVPSSFTVSHGSPRAVSTRRRGRRGVSSMI
FDYPAPGVRKDYPRPPLEETSQNQRESAAFSQDFLDMPRPSRPLKVAVIG
AGLAGLSCAKYLSDAGHKPIVLEARDVLGGKVAAWQDKDGDWVETGLHIF
FGAYPNVNQIFTELGIRDRLQWKSHSMIFAMPGQQTADGFQRFSRFEFPD
LLPAPLNGLVAILLNNEMLTL*
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mRNA from alignment at H-elongata_contig111816:757..1966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111816.960.1 ID=mRNA_H-elongata_contig111816.960.1|Name=mRNA_H-elongata_contig111816.960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig111816:757..1966+ (Himanthalia elongata Himel1 dioecious)
ATGGTATGCTACGGCAAGATCATCGTGGTGGCTTGTTTTGCAGAGAATGT CGTGTCAGCCTTCGTACCATCGTCTTTTACGGTGAGCCATGGTTGTTGAA TTATAGATGTGCATGGATTTCAGAGTGGGTCCTCATGATCTCAGTTTTGC ATGCACCTTCCACCATCCTGGGCCTGTCAACTGCCAACGCACGCACAGGT TCCCCGGAATATTTGATGGCCCCATTTCCTGATACCCTGCTGCAATAATT TGTTATTCTGGTTTATTTTCTTTGAATCCAAGGGGACAGAAGCTCCCCGT GCCGTATCGACACGGCGGCGAGGCAGACGCGGCGTTTCATCGATGATATT CGACTATCCCGCCCCGGGAGTTAGAAAAGACTATCCACGTCCCCCTCTTG AGGAAACATCGCAGAATCAACGGGAATCTGCAGCCTTTTCCCAAGATTTT CTCGATATGCCTCGACCTTCACGGCCGCTTAAAGTGGCCGTTATTGGGGC TGGACTTGCGGGACTTTCGTGCGCAAAGTATCTTTCTGATGCGGGCCACA AGCCCATCGTTCTCGAGGTGAAAATGACTCGACAGGGCTGGGGAAATTTT ATCCTTAGACCGATTGACATTTTGAGAGTTTTAGTCAGTATTCTTCGTAG CTTCAAACTACCAGTAAATTATTTACCGCTCTTGCTTTGGTCTTGCATCT TCCTGTTTATTGATTGTGCCCCGACTCTTTCACATACTCCGTATTACATA CCGTTTACATCTTTCTTGCCCGTCGCCTTCTGAACACCACGAATAGCTCC CTTCTAATAACTTGTCTTTTGATATGTGTGTGAGTGATTTTTTTAATTAA CATAGTCAGCAGCTTACTCCACGCCGAAATATGTTCCGCACACCCGGCTC ACACTTTCATCAGGCGAGGGATGTATTAGGAGGCAAGGTGGCCGCATGGC AAGATAAGGATGGCGACTGGGTCGAAACAGGTCTCCACATATTCTTCGGT GCCTACCCTAACGTCAATCAAATATTTACAGAGTTAGGAATTCGTGACCG GTTGCAGTGGAAGTCTCACAGCATGATTTTTGCGATGCCTGGGCAGCAGA CAGCGGATGGATTCCAGCGCTTTTCGCGCTTCGAATTTCCCGACCTGCTG CCTGCTCCACTCAACGGCCTGGTGGCAATTCTTCTTAACAATGAGATGCT GACCTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig111816:757..1966+

>mRNA_H-elongata_contig111816.960.1 ID=mRNA_H-elongata_contig111816.960.1|Name=mRNA_H-elongata_contig111816.960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig111816:757..1966+ (Himanthalia elongata Himel1 dioecious)
ATGGTATGCTACGGCAAGATCATCGTGGTGGCTTGTTTTGCAGAGAATGT
CGTGTCAGCCTTCGTACCATCGTCTTTTACGGTGAGCCATGGTTATGGTA
TGCTACGGCAAGATCATCGTGGTGGCTTGTTTTGCAGAGAATGTCGTGTC
AGCCTTCGTACCATCGTCTTTTACGGTGAGCCATGGTTCTCCCCGTGCCG
TATCGACACGGCGGCGAGGCAGACGCGGCGTTTCATCGATGATATTCGAC
TATCCCGCCCCGGGAGTTAGAAAAGACTATCCACGTCCCCCTCTTGAGGA
AACATCGCAGAATCAACGGGAATCTGCAGCCTTTTCCCAAGATTTTCTCG
ATATGCCTCGACCTTCACGGCCGCTTAAAGTGGCCGTTATTGGGGCTGGA
CTTGCGGGACTTTCGTGCGCAAAGTATCTTTCTGATGCGGGCCACAAGCC
CATCGTTCTCGAGCTCCCCGTGCCGTATCGACACGGCGGCGAGGCAGACG
CGGCGTTTCATCGATGATATTCGACTATCCCGCCCCGGGAGTTAGAAAAG
ACTATCCACGTCCCCCTCTTGAGGAAACATCGCAGAATCAACGGGAATCT
GCAGCCTTTTCCCAAGATTTTCTCGATATGCCTCGACCTTCACGGCCGCT
TAAAGTGGCCGTTATTGGGGCTGGACTTGCGGGACTTTCGTGCGCAAAGT
ATCTTTCTGATGCGGGCCACAAGCCCATCGTTCTCGAGGCGAGGGATGTA
TTAGGAGGCAAGGTGGCCGCATGGCAAGATAAGGATGGCGACTGGGTCGA
AACAGGTCTCCACATATTCTTCGGTGCCTACCCTAACGTCAATCAAATAT
TTACAGAGTTAGGAATTCGTGACCGGTTGCAGTGGAAGTCTCACAGCATG
ATTTTTGCGATGCCTGGGCAGCAGACAGCGGATGGATTCCAGCGCTTTTC
GCGCTTCGAATTTCCCGACCTGCTGCCTGCTCCACTCAACGGCCTGGTGG
CAATTCTTCTTAACAATGAGATGCTGACCTTGTGAGCGAGGGATGTATTA
GGAGGCAAGGTGGCCGCATGGCAAGATAAGGATGGCGACTGGGTCGAAAC
AGGTCTCCACATATTCTTCGGTGCCTACCCTAACGTCAATCAAATATTTA
CAGAGTTAGGAATTCGTGACCGGTTGCAGTGGAAGTCTCACAGCATGATT
TTTGCGATGCCTGGGCAGCAGACAGCGGATGGATTCCAGCGCTTTTCGCG
CTTCGAATTTCCCGACCTGCTGCCTGCTCCACTCAACGGCCTGGTGGCAA
TTCTTCTTAACAATGAGATGCTGACCTTGTGA
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