mRNA_H-elongata_contig11174.955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11174.955.1
Unique NamemRNA_H-elongata_contig11174.955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: D7FLG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG4_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 1.220e-73
Identity = 131/215 (60.93%), Postives = 162/215 (75.35%), Query Frame = 2 
Query:  902 VGLGEVVPALMKSGAAFLVGTWLAKKLSPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQGFMASLSGPMEGLAAKA 1546
            V L  V+P  +K  A FL+  WL K LSP+V  QVRAAR +YT YLI SQALCMY+RYLIW++ DDT+V VPPP QLKK+++  G AG      E A AA        ASPL P+++K++TSR   K+YDMK +QG+RR QFWASL MC+THL+RGMIKPM+ QVSFGVL+LLD+PL  IY+LGR+A+G+LARPF+KQG M SLSGPME +A KA
Sbjct:    4 VDLKVVLPQAIKQLAFFLLARWLNKSLSPTVESQVRAARAIYTVYLIVSQALCMYIRYLIWKKGDDTEVEVPPPAQLKKLIQDAGKAGVTG--NEGAPAATXXXXXXXASPLGPVMDKMMTSRMAVKKYDMKFIQGVRRRQFWASLMMCYTHLRRGMIKPMMFQVSFGVLSLLDNPLVHIYLLGREAKGNLARPFKKQGLMESLSGPMETMATKA 216
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A6H5KF45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF45_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 7.000e-69
Identity = 127/215 (59.07%), Postives = 158/215 (73.49%), Query Frame = 2 
Query:  902 VGLGEVVPALMKSGAAFLVGTWLAKKLSPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQGFMASLSGPMEGLAAKA 1546
            V L  V+P  +K  A FL+  WL   LSP V  QVRAAR +YT YL+ SQALCMY+RYLIW++DDD +V VPPP QLKK+++  G AG      E A A        AASPL P+++K++TSR   K+YDMK +QG+RR QFWASL MC+THL+RGMIKPM+ QVSFGVL+ LD+PL  IY+LGR+A+G+LARPF+KQG M SLSG ME +A KA
Sbjct:  228 VNLKVVLPQAIKQLAFFLLARWLNMSLSPKVESQVRAARAIYTVYLMVSQALCMYIRYLIWKKDDDAEVEVPPPAQLKKLIQDAGKAGVTG--NEGAAATXXXXXXXAASPLGPVMDKMMTSRMAVKKYDMKFIQGVRRRQFWASLMMCYTHLRRGMIKPMMFQVSFGVLSFLDNPLVHIYLLGREAKGNLARPFKKQGLMESLSGSMEAMATKA 440
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A7S2YS16_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YS16_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.370e-12
Identity = 66/210 (31.43%), Postives = 101/210 (48.10%), Query Frame = 2 
Query:  968 LAKKL---SPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPP--PQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQGFMASLSGPMEGLAAKAEEARVAAEAASE 1582
            +AK+L   SP VA     AR VY GY+I  Q    ++R    + ++ T + V  P    L+  ++G+GG                    G+   +  +   LL+S T   EYD+K  + M+RG  +   F  F H K   ++P+++Q   G L +  SPLF++YVLGR  E    RPF+      S    ++ L A+A EA+  AE A+E
Sbjct:  192 IAKRLDLTSPKVAA---LARGVYIGYIIVLQLFLAFVRIKAKEANNRTPITVNNPLSSALQGQLDGLGG--------------------GSNGMVKMLASSLLSSSTSVMEYDLKEAKNMQRGLLFNMAFQWFLHFKMKQVQPLLIQTGSGFLNMFYSPLFQVYVLGRNLE----RPFKTN---TSSMAKLQELQAQAAEAQAKAEGATE 371
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: B8C4Z3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4Z3_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 6.100e-12
Identity = 52/176 (29.55%), Postives = 94/176 (53.41%), Query Frame = 2 
Query: 1004 VRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQGFMASLSGPMEG 1531
            VR AR+ +  Y+I+ +   +Y+R  + Q++D T + +  P  L  ++EG+          +K G        G  + +  +  ++L++ T   EYD++ ++ M  G  +  +F+ F H +   ++P+++Q + GV+ L+ SPL+++YVLGR  E    RPF K G    L G MEG
Sbjct:  491 VRIARLAFVAYIIAVEVFLLYVRLRVKQQNDRTPITISNP--LAGIIEGI----------QKDG--------GGGAMVKNLANQMLSTHTTIYEYDLQQIKKMNSGLLFPMVFLYFLHFRMKQVQPLLMQTATGVMNLVYSPLWQVYVLGRNLE----RPF-KVGGANPLLGAMEG 641
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A7S0GIX0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIX0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.050e-11
Identity = 60/183 (32.79%), Postives = 88/183 (48.09%), Query Frame = 2 
Query:  965 WLAKKLSPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQGFMASL 1513
            +L +KL P     V  AR  + GY+I  QA   Y R +   R++ T + +        M + V    ++A + +  G +     +G    +  +  KLL+S +   EYDMK     R       LF    H K G ++P+ LQ S G+++L+ SPLF+IYVLGR  E    RPF K G  A L
Sbjct:  116 FLTRKLDPKDRKIVMIARFTFIGYMIIMQAFLTYARIMARMRNNRTPITI-----TNAMADMVKTQLSSAISKQTPGGSKG---QGENDMVKGLTSKLLSSESTVMEYDMKQAASARSSLLMPLLFTWVIHFKFGQVQPLFLQASSGIVSLIYSPLFQIYVLGRNLE----RPF-KTGLGAGL 285
[Close]
BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A6U1VB83_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1VB83_TRICV)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-11
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 2 
Query:  965 WLAKKLSPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQG 1498
            +LA+K   +    V+ AR  Y  YL+ +Q    Y+R      DD T + +  P       +   G G     G  A  +L+G              + L+S+T A EYD+K  + M     +  LF+   H K G ++P+ILQ + G+  L  SPLF++YVLGR  E    RPF+  G
Sbjct:  128 FLARKFDLNDKRVVKIARFAYIAYLVLTQIFLAYVRIRAKSLDDRTPLTIQNPLSSALQSQLASG-GAXXXXGADAVKSLAG--------------QFLSSQTTAVEYDLKQAKSMSNSLLFPMLFLWVLHFKMGQVQPLILQTASGLSNLFYSPLFQVYVLGRNLE----RPFKSSG 286
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A7S2C1H3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1H3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.030e-10
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 2 
Query: 1229 SPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFR 1489
            SP++ +   L    T AKEYDMK+V+     QF+  L M   H K    K ++L     +L L  S LF+I++LGR+A GDLARPF+
Sbjct:    2 SPISGIASALSKKPTTAKEYDMKLVKQEISSQFFPMLMMYVLHFKAAWHKAIVLAPVSSLLQLFSSQLFQIHILGREATGDLARPFK 88
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: A0A7S2KRT9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRT9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-9
Identity = 46/178 (25.84%), Postives = 88/178 (49.44%), Query Frame = 2 
Query:  965 WLAKKLSPSVAGQVRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFRKQG 1498
            +L++++    A  VR AR  +  Y+++ Q   +Y+R+     +D T++ +  P  L  +V+G  G              +          +  + +++L+S T   EYD+   + M  G     +F+ F H +   ++P+++Q + GV+ ++ SPLF++YVLGR  E    RPF+  G
Sbjct:  109 FLSQRIDILDAKTVRIARFAFVAYIVTMQLFLLYVRFRAKAINDRTEITLSNP--LASLVQGAAGXXXXXXXXXXXXNFM----------VKALADQMLSSTTTIYEYDVSQAKKMNSGLLMPMVFLYFLHFRMKQVQPLLMQTATGVMNMVYSPLFQVYVLGRNLE----RPFKSPG 270
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BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: K0RF32_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RF32_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 1.390e-9
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 2 
Query: 1004 VRAARIVYTGYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAAGEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPFR 1489
            V+ AR  + GY+++SQ   +Y+R      +D T +++  P  L  ++                        EG++  +  M  ++L S T   EYD++    M  G  +  +F+ F H K   ++P+++Q + G+  L+ SPLF++YVLGR  +    RPFR
Sbjct:  191 VKIARYCFLGYMVASQLFIVYVRMRAKAINDRTVISIDNP--LASLIPS---------------------GEGSSFLVKTMASQILNSETTVMEYDLQEASKMNSGLLFPLVFLYFLHFKMKQVQPLLMQTASGISNLIYSPLFQVYVLGRNVQ----RPFR 325
[Close]
BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Match: F0YP71_AURAN (Uncharacterized protein HYP6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP71_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.730e-9
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 2 
Query: 1244 MLEKLLTSRTPAKEYDMKVVQGMRRGQFWASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLARPF 1486
            +++KL +  T  ++YD+ +V+  R  Q  +   MCF H+K+GM++P++ Q   GV AL+  PL + ++LGR    DL RPF
Sbjct:   22 LVDKLTSKETTVRDYDLDMVKKGRNSQLGSLALMCFLHIKKGMVQPLVAQAVMGVAALVKEPLVQAHLLGR----DLERPF 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11174.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FLG4_ECTSI1.220e-7360.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF45_9PHAE7.000e-6959.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YS16_9STRA3.370e-1231.43Hypothetical protein (Fragment) n=2 Tax=Amphiprora... [more]
B8C4Z3_THAPS6.100e-1229.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0GIX0_9STRA2.050e-1132.79Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6U1VB83_TRICV2.690e-1131.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2C1H3_9STRA7.030e-1042.53Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2KRT9_9STRA1.090e-925.84Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0RF32_THAOC1.390e-927.78Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
F0YP71_AURAN2.730e-938.27Uncharacterized protein HYP6 n=1 Tax=Aureococcus a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11174contigH-elongata_contig11174:3214..7738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog35128.Thaps5896
Preferred nameRNY1
KEGG koko:K01166,ko:K07870,ko:K14430
KEGG TC2.A.47.2
KEGG Pathwayko04137,ko04214,map04137,map04214
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000902,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005775,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006401,GO:0006605,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006886,GO:0006915,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0010256,GO:0010467,GO:0012501,GO:0012505,GO:0015031,GO:0015698,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032502,GO:0032989,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034655,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048856,GO:0048869,GO:0051179,GO:0051205,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061024,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098827,GO:0140098,GO:1901360,GO:1901361,GO:1901564,GO:1901575
EggNOG free text desc.Phosphate transport (Pho88)
EggNOG OGs2XF4Z@2836,COG5065@1,KOG1642@1,KOG1642@2759,KOG4554@2759
EC3.1.27.1
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03016,ko03029,ko04031
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionInorganic phosphate transporter Pho88
Ec32 orthologEc-17_001270.1
Exons6
Model size2189
Cds size1623
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11174.955.1prot_H-elongata_contig11174.955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11174 3690..7608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.512419-UTR-H-elongata_contig11174:3213..35181622929640.512419-UTR-H-elongata_contig11174:3213..3518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 3214..3518 -
1691679101.9319932-UTR-H-elongata_contig11174:3213..35181691679101.9319932-UTR-H-elongata_contig11174:3213..3518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 3214..3518 -
1622929640.5317578-UTR-H-elongata_contig11174:3558..36891622929640.5317578-UTR-H-elongata_contig11174:3558..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 3559..3689 -
1691679101.9452925-UTR-H-elongata_contig11174:3558..36891691679101.9452925-UTR-H-elongata_contig11174:3558..3689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 3559..3689 -
1622929640.6332133-UTR-H-elongata_contig11174:7608..77381622929640.6332133-UTR-H-elongata_contig11174:7608..7738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 7609..7738 -
1691679102.0042362-UTR-H-elongata_contig11174:7608..77381691679102.0042362-UTR-H-elongata_contig11174:7608..7738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11174 7609..7738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.555852-CDS-H-elongata_contig11174:3689..38991622929640.555852-CDS-H-elongata_contig11174:3689..3899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 3690..3899 -
1691679101.9548683-CDS-H-elongata_contig11174:3689..38991691679101.9548683-CDS-H-elongata_contig11174:3689..3899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 3690..3899 -
1622929640.5687952-CDS-H-elongata_contig11174:4401..45511622929640.5687952-CDS-H-elongata_contig11174:4401..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 4402..4551 -
1691679101.9654005-CDS-H-elongata_contig11174:4401..45511691679101.9654005-CDS-H-elongata_contig11174:4401..4551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 4402..4551 -
1622929640.5840547-CDS-H-elongata_contig11174:5116..52721622929640.5840547-CDS-H-elongata_contig11174:5116..5272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 5117..5272 -
1691679101.9751246-CDS-H-elongata_contig11174:5116..52721691679101.9751246-CDS-H-elongata_contig11174:5116..5272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 5117..5272 -
1622929640.6012444-CDS-H-elongata_contig11174:5884..60501622929640.6012444-CDS-H-elongata_contig11174:5884..6050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 5885..6050 -
1691679101.9863858-CDS-H-elongata_contig11174:5884..60501691679101.9863858-CDS-H-elongata_contig11174:5884..6050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 5885..6050 -
1622929640.6185586-CDS-H-elongata_contig11174:6667..76081622929640.6185586-CDS-H-elongata_contig11174:6667..7608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 6668..7608 -
1691679101.9960856-CDS-H-elongata_contig11174:6667..76081691679101.9960856-CDS-H-elongata_contig11174:6667..7608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11174 6668..7608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11174.955.1

>prot_H-elongata_contig11174.955.1 ID=prot_H-elongata_contig11174.955.1|Name=mRNA_H-elongata_contig11174.955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=541bp
MPRRARSFVTLPRFILLVAGATVGSGPLGTVTTCRPSSSHQFVSFSAVKA
VTAESSPQRVKNQAWDAAIRSWNYRRRRGVVQDVHLARIIPSEHGRLPSG
AADPAVDTITRSSHKLPWMKVRGGAGTRVDIGDRILGGDDSADEQSESGS
EGAGEVVGDPDIDEDGIDGVKEDKWSRVLHFPDTSAAVVDGKAQDQAGGS
KNEDRQDSMEQAEVAKAVRIGEEGSTGTTDETAKVEGEGNTAAAGEGAEA
AGSAALKVGLGEVVPALMKSGAAFLVGTWLAKKLSPSVAGQVRAARIVYT
GYLISSQALCMYLRYLIWQRDDDTDVAVPPPPQLKKMVEGVGGAGTAAAA
GEKAGAALSGVAEGAASPLAPMLEKLLTSRTPAKEYDMKVVQGMRRGQFW
ASLFMCFTHLKRGMIKPMILQVSFGVLALLDSPLFKIYVLGRQAEGDLAR
PFRKQGFMASLSGPMEGLAAKAEEARVAAEAASEKGGAGARQGSDASGGV
SDDDSDAGAAVGANKKRDGGDDGDDYDSDDYDADDADSGD*
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mRNA from alignment at H-elongata_contig11174:3214..7738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11174.955.1 ID=mRNA_H-elongata_contig11174.955.1|Name=mRNA_H-elongata_contig11174.955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4525bp|location=Sequence derived from alignment at H-elongata_contig11174:3214..7738- (Himanthalia elongata Himel1 dioecious)
ATCAAGAGTGTTTAAGCATTTCCCATCCCACATCATTTCTTTACCCTCTG
GTGCGTGGTACATCATCACGTGTCTATTGAACAAACTCATCTACTCAATC
AGATTCCCTGTTGTGGAGCGCGGTGTAAGCATGCCGCGAAGGGCCCGAAG
CTTCGTCACATTGCCACGGTTCATCTTGCTTGTTGCAGGAGCGACGGTTG
GAAGCGGCCCCCTTGGCACCGTCACGACTTGTCGGCCTTCATCCTCCCAC
CAGTTCGTCTCATTCAGCGCAGTCAAAGCGGTGACTGCTGAATCATCTCC
TCAGCGGGTAAAGAATCAAGCGTGGGACGCCGCGATCCGGTCCTGGAATT
ATCGTCGGCGACGTGGTGTTGTACAGGACGTCCACCTGGCCCGGATAATA
CCAAGCGAGCACGGACGCCTGCCATCAGGTGCTGCGGATCCCGCGGTTGA
TACTATTACTAGAAGCTCCCACAAGCTCCCGTGGATGAAAGTACGGGGAG
GTGCAGGAACTAGGGTGGATATCGGTGATCGAATCCTCGGTGGTGATGAC
TCTGCGGATGAGCAATCGGAAAGTGGTTCAGAAGGGGCAGGGGAAGTGGT
CGGCGATCCGGATATAGATGAGGATGGAATCGACGGCGTCAAAGAAGACA
AGTGGTCGCGTGTATTGCATTTTCCCGACACAAGTGCTGCAGTTGTCGAC
GGGAAGGCGCAAGATCAGGCAGGCGGAAGTAAAAACGAGGATCGCCAAGA
TAGTATGGAGCAAGCAGAGGTGGCAAAAGCCGTACGCATAGGAGAGGAGG
GGTCTACAGGAACGACAGATGAGACGGCAAAGGTAGAGGGAGAAGGGAAT
ACCGCGGCGGCAGGGGAAGGGGCAGAGGCGGCAGGGTCCGCGGCCTTAAA
AGTCGGGCTCGGAGAGGTGGTGCCGGCGTTGATGAAGAGCGGGGCTGCAT
TCTTGGTGGGCACCTGGTTGGCCAAGAAGCTCAGTCCATCCGTGGCGGGC
CAAGTGCGCGCAGCGCGCATCGTTTACACGGGGTACCTGATCTCCTCGCA
AGCGCTCTGCATGTACCTCAGGTGGGTTGCGGAGTGGGGGGGGGGCAACG
AGTATTGAAGACACAAATACAGAGTACTTCGCAAGTCCTCACATCACAGT
AGAGAGCTTTCGCTGTTGCGTGTATCGTATCACTTTTGTCTAGAGTGCAA
CTACTTGTTTGCATGTTTCGATCGTTGTAGGATGCATGCTTTGAATCCGC
CTTTGGGGTTCCGTGGCAGGGAGCTGGAGGTACATGTACCATACTCGAGA
AGGTACTAGCTCCACTGCTGTCATGATTCTCCCTGCGTGCTTGGGGCCAG
TCGCATGTTGAAGACCGCTGTACGAAAGAACTTTCTGTAGACGACCATGT
CACCGAATTCACCTCTCGGAAAACAAAGGAGGAGATCAAGGCGCGTTATT
TTCCTTTGTCCCTTATCCCTCCCCCCGCTCCCCATCCCAACGAATGCGCG
AGTCATCAACGTTCGAGTTTTGGTCGCTGCTCGCGTGTGGTGATTTTTTT
CTTGAAGGCCGAAAAAACGCCTGACGTTAGTGATGCAACCTAAAGCCATT
GACCTTACCCGGGAACCGGCTGCTTCGTTCTCACACTCGCGTAATAAGGG
AGGTCTTTATTTCGTGCGCGGATCTCTATTCAATCCAGGTACCTCATATG
GCAGCGAGACGATGATACCGACGTGGCGGTTCCCCCTCCGCCGCAACTCA
AGAAAATGGTGGAGGGGGTTGGGGGAGCAGGCACCGCCGCCGCGGCGGGA
GAGAAAGCAGGGGCGGCGTTGAGCGGTGTAGCTGAGGGCGCAGCTTCCCC
CCTCGTGAGTATGTGTGGTGCAGTGCAAATGTAGTACAGCGCAGCGCAGA
CCGCCCGTCCGCCTGTGAGATGCACGATAGAGACAGCCCAAGATGACTAC
GGTGTGAACTGATCTGCCGTCAGTCGGGTGTACGGTGTTCCCTTCTTTCG
GCAGCTTGACGGAGTTCGCGCGGTGGGGAATCGAGGGCAGAGAACGGGGG
ATACCGGTCCCACGAGGCGCTTCGCTACTTTCTGTTTTACGCACAATCGA
ACAGCCAGATAACCTTTCTCATCGAAGATATATCGCTTCCGCGGTAGGGC
GTGCTAGAGACCACGAAGAGACGCTCCTCCTCCTCCCCCGTCTTAAGTCT
CTTCAAACACGCATCTTGCCCCCTTTCCCCGTCCTGTCCGACCCTACCCC
ACGCTCTAACCTCCCCTTCGTTCCCGCAAGCGTGCGGAGGATCGTATTTT
GTGTCGTACGCCAGTATTGTAGCATAATGCTTTACACGAGCGAAGTTCTG
GCGAGTGTGAGCCGAGTTTCGGACCCCCACCTGCACGCGCGCGCGCGCGA
CCCTTTCCTTCCTTCCCTCTCCACCAGAACTCCTCGTCTCACGTACTTCC
CCCCCCCTGAATTCAGGCGCCTATGCTAGAAAAACTGCTGACCTCGAGGA
CTCCTGCGAAGGAGTACGACATGAAGGTGGTGCAGGGGATGCGGCGAGGG
CAGTTCTGGGCGTCCCTCTTCATGTGTTTCACGCACCTCAAGAGGGGCAT
GATCAAGCCAATGATACTTCAGGCATGTCAAGCCACACGCGGCGGGGTTA
TTTGCCTCACCCTTTCTTTCTCTCTAATTTAGGGATTTTTCGGCCACAGA
TGGGCGTTTTTTGGACGGGATACAAGGGGGGAGGAATGTTACGGAAGAAT
TGATGGTATATTTTACTGTCAACCCTTATCTGGTTTCTTCTATGTACCTC
TTGATAGTTATATCGCATACTTTTTCTGATTCATTTAGTTTCCATTCTCG
TGCCCTTACAGTATACCTTTTTTTTATCTCATGTTGTATCCTTTTCTGGA
TCCCACATGTACATTTTATAGGGCCGGACGTGGCGCTAGCGCTGCCTTCC
GCCGCCGCCGAAGGGGTTTCCCGCCCAAAGAGGCACCGTCGTGGCTGTAC
GGTGCGAAGCACCGGTCGCGCGCGCAGTGGAGCGCTCGTCGCCACTCCCC
GTATGGCGTAGCATGCTTTGTAGCCAACTTTATTATGTCCATTTTCGCTT
GTTTTTTTTTGTGGGTCAAACGCAATATGTTTTTTTCTTTGCCCTGTCCC
CTCGTGGTCTCCGGATGACGACCGCTAACCTGGACAGGTATCGTTTGGGG
TGCTAGCGCTCTTGGACAGCCCCTTGTTCAAGATATACGTCTTAGGACGG
CAGGCCGAGGGTGACCTGGCGCGTCCCTTTAGGAAGCAGGGTTTCATGGC
CAGCCTCAGCGGACCCATGGAGGGCCTCGCGGCTAAGGTGACGAAAATAA
TAGAGAGGAAAGCTTTGCTCAAAGCCCTTGCTGGGATACCTGAGTGCAGA
GACAGCATGAAGCGAGCTGATGGCGGAACACGCTGTGGTCCTGCTCTGCC
TATACATCGAGCCGGTGGTGTTGCCTTTACACCTTTTTTTATCCATGATT
GTCGGCGGGCGGTCTTTCCGAGCCCAGGGTTTGTGCTGCTAACCAAAACT
ATATGTGTACGTAGCATGTTTTGTTAGAGGACCCCTTGGGGGGAGAAAAC
TATCTTGAGGTGGGTGCGCGTGGCATCGCTGTTTCCTTTTCTCTTGAGTC
AAAGCCCCCTCTTCGGGACGTGGGAGGTGAGGTGTGACTTATGCACCACC
TTGGCCTCGCAGCCCTCTTATCCTTCGCCCACCTTTTATCTGAAACTAAT
TGCAAGACTGAACTGTTGTCCTGCGTAGCTGCAACAGTATCGATTGGTTC
CTTGCGCCCTCGGTTCGATTTTCGGTCGGTAAAAACAAGGCGGAAGAGGC
CAGGGTCGCGGCCGAGGCGGCGTCGGAAAAAGGAGGGGCGGGCGCGAGAC
AGGGCAGCGACGCGAGTGGGGGTGTTTCTGATGATGATTCTGATGCTGGT
GCTGCGGTAGGCGCCAATAAGAAGAGAGATGGGGGAGACGATGGCGATGA
TTATGATAGTGATGATTACGATGCTGATGATGCTGATAGCGGTGACTGAT
ATATAGACAATAATTATATGGGCGTGTAAACGATCAGGAATGAGAATAAC
AGCGGCGATAAGTTAGGGACGCCCCGAGTGTTTTTCTACAGCCATTCACA
CCGATGATACGGCGGAAAAGAAACCAATCAAAATGCCGATGAGCGCCCTG
AAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATGTGTGTTTTCTT
TTTTGCAGAGCGTGATACGTCTCTGCGTCACCATTATACTTATTTCTAGT
GAAAATATGAAAATCTTCGATAAGGACAGAAGATCCATCGTTACTCCTTG
TCGTTGGTGTGATTGGTTTGTTCTTCCCGAGAGGGGAAGGCGGAACAACA
AAAGCTAGCGAGTGGTGGTTACGTTTCAAAACTGGCAGAGAGTTGGAGGC
TTTCAGCCGTCTCCCTCGTAAACTAACGCTCTCCGAGATACCGCTACCCC
TTGGCGCCGGCGGGAGGTATCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig11174:3214..7738-

>mRNA_H-elongata_contig11174.955.1 ID=mRNA_H-elongata_contig11174.955.1|Name=mRNA_H-elongata_contig11174.955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3246bp|location=Sequence derived from alignment at H-elongata_contig11174:3214..7738- (Himanthalia elongata Himel1 dioecious)
ATGCCGCGAAGGGCCCGAAGCTTCGTCACATTGCCACGGTTCATCTTGCT
TGTTGCAGGAGCGACGGTTGGAAGCGGCCCCCTTGGCACCGTCACGACTT
GTCGGCCTTCATCCTCCCACCAGTTCGTCTCATTCAGCGCAGTCAAAGCG
GTGACTGCTGAATCATCTCCTCAGCGGGTAAAGAATCAAGCGTGGGACGC
CGCGATCCGGTCCTGGAATTATCGTCGGCGACGTGGTGTTGTACAGGACG
TCCACCTGGCCCGGATAATACCAAGCGAGCACGGACGCCTGCCATCAGGT
GCTGCGGATCCCGCGGTTGATACTATTACTAGAAGCTCCCACAAGCTCCC
GTGGATGAAAGTACGGGGAGGTGCAGGAACTAGGGTGGATATCGGTGATC
GAATCCTCGGTGGTGATGACTCTGCGGATGAGCAATCGGAAAGTGGTTCA
GAAGGGGCAGGGGAAGTGGTCGGCGATCCGGATATAGATGAGGATGGAAT
CGACGGCGTCAAAGAAGACAAGTGGTCGCGTGTATTGCATTTTCCCGACA
CAAGTGCTGCAGTTGTCGACGGGAAGGCGCAAGATCAGGCAGGCGGAAGT
AAAAACGAGGATCGCCAAGATAGTATGGAGCAAGCAGAGGTGGCAAAAGC
CGTACGCATAGGAGAGGAGGGGTCTACAGGAACGACAGATGAGACGGCAA
AGGTAGAGGGAGAAGGGAATACCGCGGCGGCAGGGGAAGGGGCAGAGGCG
GCAGGGTCCGCGGCCTTAAAAGTCGGGCTCGGAGAGGTGGTGCCGGCGTT
GATGAAGAGCGGGGCTGCATTCTTGGTGGGCACCTGGTTGGCCAAGAAGC
TCAGTCCATCCGTGGCGGGCCAAGTGCGCGCAGCGCGCATCGTTTACACG
GGGTACCTGATCTCCTCGCAAGCGCTCTGCATGTACCTCAGATGCCGCGA
AGGGCCCGAAGCTTCGTCACATTGCCACGGTTCATCTTGCTTGTTGCAGG
AGCGACGGTTGGAAGCGGCCCCCTTGGCACCGTCACGACTTGTCGGCCTT
CATCCTCCCACCAGTTCGTCTCATTCAGCGCAGTCAAAGCGGTGACTGCT
GAATCATCTCCTCAGCGGGTAAAGAATCAAGCGTGGGACGCCGCGATCCG
GTCCTGGAATTATCGTCGGCGACGTGGTGTTGTACAGGACGTCCACCTGG
CCCGGATAATACCAAGCGAGCACGGACGCCTGCCATCAGGTGCTGCGGAT
CCCGCGGTTGATACTATTACTAGAAGCTCCCACAAGCTCCCGTGGATGAA
AGTACGGGGAGGTGCAGGAACTAGGGTGGATATCGGTGATCGAATCCTCG
GTGGTGATGACTCTGCGGATGAGCAATCGGAAAGTGGTTCAGAAGGGGCA
GGGGAAGTGGTCGGCGATCCGGATATAGATGAGGATGGAATCGACGGCGT
CAAAGAAGACAAGTGGTCGCGTGTATTGCATTTTCCCGACACAAGTGCTG
CAGTTGTCGACGGGAAGGCGCAAGATCAGGCAGGCGGAAGTAAAAACGAG
GATCGCCAAGATAGTATGGAGCAAGCAGAGGTGGCAAAAGCCGTACGCAT
AGGAGAGGAGGGGTCTACAGGAACGACAGATGAGACGGCAAAGGTAGAGG
GAGAAGGGAATACCGCGGCGGCAGGGGAAGGGGCAGAGGCGGCAGGGTCC
GCGGCCTTAAAAGTCGGGCTCGGAGAGGTGGTGCCGGCGTTGATGAAGAG
CGGGGCTGCATTCTTGGTGGGCACCTGGTTGGCCAAGAAGCTCAGTCCAT
CCGTGGCGGGCCAAGTGCGCGCAGCGCGCATCGTTTACACGGGGTACCTG
ATCTCCTCGCAAGCGCTCTGCATGTACCTCAGGTACCTCATATGGCAGCG
AGACGATGATACCGACGTGGCGGTTCCCCCTCCGCCGCAACTCAAGAAAA
TGGTGGAGGGGGTTGGGGGAGCAGGCACCGCCGCCGCGGCGGGAGAGAAA
GCAGGGGCGGCGTTGAGCGGTGTAGCTGAGGGCGCAGCTTCCCCCCTCGT
ACCTCATATGGCAGCGAGACGATGATACCGACGTGGCGGTTCCCCCTCCG
CCGCAACTCAAGAAAATGGTGGAGGGGGTTGGGGGAGCAGGCACCGCCGC
CGCGGCGGGAGAGAAAGCAGGGGCGGCGTTGAGCGGTGTAGCTGAGGGCG
CAGCTTCCCCCCTCGCGCCTATGCTAGAAAAACTGCTGACCTCGAGGACT
CCTGCGAAGGAGTACGACATGAAGGTGGTGCAGGGGATGCGGCGAGGGCA
GTTCTGGGCGTCCCTCTTCATGTGTTTCACGCACCTCAAGAGGGGCATGA
TCAAGCCAATGATACTTCAGGCGCCTATGCTAGAAAAACTGCTGACCTCG
AGGACTCCTGCGAAGGAGTACGACATGAAGGTGGTGCAGGGGATGCGGCG
AGGGCAGTTCTGGGCGTCCCTCTTCATGTGTTTCACGCACCTCAAGAGGG
GCATGATCAAGCCAATGATACTTCAGGTATCGTTTGGGGTGCTAGCGCTC
TTGGACAGCCCCTTGTTCAAGATATACGTCTTAGGACGGCAGGCCGAGGG
TGACCTGGCGCGTCCCTTTAGGAAGCAGGGTTTCATGGCCAGCCTCAGCG
GACCCATGGAGGGCCTCGCGGCTAAGGTATCGTTTGGGGTGCTAGCGCTC
TTGGACAGCCCCTTGTTCAAGATATACGTCTTAGGACGGCAGGCCGAGGG
TGACCTGGCGCGTCCCTTTAGGAAGCAGGGTTTCATGGCCAGCCTCAGCG
GACCCATGGAGGGCCTCGCGGCTAAGGCGGAAGAGGCCAGGGTCGCGGCC
GAGGCGGCGTCGGAAAAAGGAGGGGCGGGCGCGAGACAGGGCAGCGACGC
GAGTGGGGGTGTTTCTGATGATGATTCTGATGCTGGTGCTGCGGTAGGCG
CCAATAAGAAGAGAGATGGGGGAGACGATGGCGATGATTATGATAGTGAT
GATTACGATGCTGATGATGCTGATAGCGGTGACTGAGCGGAAGAGGCCAG
GGTCGCGGCCGAGGCGGCGTCGGAAAAAGGAGGGGCGGGCGCGAGACAGG
GCAGCGACGCGAGTGGGGGTGTTTCTGATGATGATTCTGATGCTGGTGCT
GCGGTAGGCGCCAATAAGAAGAGAGATGGGGGAGACGATGGCGATGATTA
TGATAGTGATGATTACGATGCTGATGATGCTGATAGCGGTGACTGA
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