prot_H-elongata_contig111645.950.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111645.950.1
Unique Nameprot_H-elongata_contig111645.950.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
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BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.590e-51
Identity = 86/110 (78.18%), Postives = 100/110 (90.91%), Query Frame = 0 
Query:    4 QRVVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESSSYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPRGILVESAVATCAG 113
            +RVVLIE+LP   GEEK+AR+R L+AECARSSP P+I+ WSQASES+SYQS LEQVLSRETLR+PGVQ+TTCNPINATLLRQHL+GVL LEGVSDP+G LV+SA+ TCAG
Sbjct:  200 RRVVLIEELPEVCGEEKKARMRSLIAECARSSPSPVIICWSQASESASYQSRLEQVLSRETLRMPGVQITTCNPINATLLRQHLKGVLALEGVSDPKGTLVQSAITTCAG 309
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BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.330e-50
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 0 
Query:    6 VVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESSSYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPRGILVESAVATCAG 113
            VVLIE+LP  +GEEK+ARLR L+AECARSSP P+I+ WSQASES+SYQS LEQVLSRETLR+PGVQ+TTCNPINATLLRQHL+GVL LEGVSDP+G LV+SA+ TCAG
Sbjct:   55 VVLIEELPEVYGEEKKARLRSLMAECARSSPSPVIICWSQASESASYQSRLEQVLSRETLRMPGVQITTCNPINATLLRQHLKGVLALEGVSDPKGTLVQSAITTCAG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE2.590e-5178.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR72_ECTSI1.330e-5079.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004582Checkpoint protein Rad17/Rad24PANTHERPTHR12172CELL CYCLE CHECKPOINT PROTEIN RAD17coord: 5..110
NoneNo IPR availablePANTHERPTHR12172:SF0CELL CYCLE CHECKPOINT PROTEIN RAD17coord: 5..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111645contigH-elongata_contig111645:927..2145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111645.950.1mRNA_H-elongata_contig111645.950.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111645 927..2145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111645.950.1 ID=prot_H-elongata_contig111645.950.1|Name=mRNA_H-elongata_contig111645.950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
GTGQRVVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESS
SYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPR
GILVESAVATCAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004582Checkpoint_prot_Rad17_Rad24