mRNA_H-elongata_contig111645.950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111645.950.1
Unique NamemRNA_H-elongata_contig111645.950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.590e-51
Identity = 86/110 (78.18%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:   10 QRVVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESSSYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPRGILVESAVATCAG 339
            +RVVLIE+LP   GEEK+AR+R L+AECARSSP P+I+ WSQASES+SYQS LEQVLSRETLR+PGVQ+TTCNPINATLLRQHL+GVL LEGVSDP+G LV+SA+ TCAG
Sbjct:  200 RRVVLIEELPEVCGEEKKARMRSLIAECARSSPSPVIICWSQASESASYQSRLEQVLSRETLRMPGVQITTCNPINATLLRQHLKGVLALEGVSDPKGTLVQSAITTCAG 309
[Close]
BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.330e-50
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:   16 VVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESSSYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPRGILVESAVATCAG 339
            VVLIE+LP  +GEEK+ARLR L+AECARSSP P+I+ WSQASES+SYQS LEQVLSRETLR+PGVQ+TTCNPINATLLRQHL+GVL LEGVSDP+G LV+SA+ TCAG
Sbjct:   55 VVLIEELPEVYGEEKKARLRSLMAECARSSPSPVIICWSQASESASYQSRLEQVLSRETLRMPGVQITTCNPINATLLRQHLKGVLALEGVSDPKGTLVQSAITTCAG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111645.950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE2.590e-5178.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR72_ECTSI1.330e-5079.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111645contigH-elongata_contig111645:927..2145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.3e-43
Seed eggNOG ortholog2880.D7FR72
Preferred nameRAD17
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006282,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035825,GO:0036094,GO:0042325,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2001020
EggNOG free text desc.mitotic DNA replication checkpoint
EggNOG OGsCOG0470@1,KOG1970@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111645.950.1prot_H-elongata_contig111645.950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111645 927..2145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.291203-CDS-H-elongata_contig111645:926..10241622929639.291203-CDS-H-elongata_contig111645:926..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 927..1024 -
1691679101.462638-CDS-H-elongata_contig111645:926..10241691679101.462638-CDS-H-elongata_contig111645:926..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 927..1024 -
1622929639.3096619-CDS-H-elongata_contig111645:1296..14021622929639.3096619-CDS-H-elongata_contig111645:1296..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 1297..1402 -
1691679101.4733372-CDS-H-elongata_contig111645:1296..14021691679101.4733372-CDS-H-elongata_contig111645:1296..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 1297..1402 -
1622929639.322415-CDS-H-elongata_contig111645:2010..21451622929639.322415-CDS-H-elongata_contig111645:2010..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 2011..2145 -
1691679101.482607-CDS-H-elongata_contig111645:2010..21451691679101.482607-CDS-H-elongata_contig111645:2010..2145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111645 2011..2145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111645.950.1

>prot_H-elongata_contig111645.950.1 ID=prot_H-elongata_contig111645.950.1|Name=mRNA_H-elongata_contig111645.950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
GTGQRVVLIEDLPSAFGEEKRARLRRLVAECARSSPCPMILIWSQASESS
SYQSELEQVLSRETLRLPGVQVTTCNPINATLLRQHLRGVLTLEGVSDPR
GILVESAVATCAG
back to top

mRNA from alignment at H-elongata_contig111645:927..2145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111645.950.1 ID=mRNA_H-elongata_contig111645.950.1|Name=mRNA_H-elongata_contig111645.950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1219bp|location=Sequence derived from alignment at H-elongata_contig111645:927..2145- (Himanthalia elongata Himel1 dioecious)
GGGACGGGGCAGCGCGTGGTGCTGATCGAGGACCTCCCATCGGCGTTCGG
AGAGGAGAAGAGGGCGCGGCTCAGGAGACTCGTGGCCGAGTGTGCACGGT
CCAGCCCGTGCCCCATGATCCTTATCTGGAGCCAGGTGTGTGGCTCCCCC
CCCCCGCATCCACCGCGGCATATGTCGCTGCTGCTGTTGGTGGTTTTGCT
GTATCGCTGTCGAGAAAGGTCTGCTTATCGTAGCGGGGGCTGGAGGACAG
CAGGAAGCTCTCTTCTTTCTCTCTGGTATATGATTATTTGACTCCCTGTC
CCATCTCTCTCCATCTTCTGCTGAAGGAAGAAAAGCTGGAGAATTCCTTG
GGTTCTCGTTAGAGACAATGGGGTCGAGGGAGAGAGGCTTTTTTGTAGGG
GGGTGGGGTGGGGGGCAAGCATGTTGCTCTTACGGCCTGTGGACGCTTGC
TTTTCGCATGTAGAGCTCAGACGATAGTCGCAAGAGGGACGGACGCGGCA
CTCTGGGATGGAGCGATTAATGTGTCTTGATCTTGATTAGTTCGTCTTGA
CCGATCTTGATTAGTTCGTCTTGACCAATCTTGATTGATCCGCGACCTCT
AGACAAAAGGGGAGTCCTCTTATTTTCGATACCCTACATACGCGCATGCC
GATCTAGCTGCCTGGGTCCCCTTAACCTACCTAACCCAACCTAAACCTCC
CTCCCTCTCTTTCCCCCACTGCGTCGTGTTGCGCCGCCCTAAGGCCTCGG
AGTCGAGCTCCTACCAGTCTGAGCTGGAGCAGGTGCTGTCCAGGGAGACG
CTAAGGTTACCGGGGGTGCAGGTGACCACGTGCAACCCCATCAACGCTAG
TGAGTCTTTGCGACCTGGGTATCGCGTGACCGCGTGGGCTCGATCTGCCT
GCCTGTTTGTCTTTTACTTTGCGTCTCTTTCTAATTATTTTATGATAATA
TCTGTATTTGACTCATTTTTCTCTTTATATTTATTTTATATTTGTATTTA
TTTTCCCTTTTTTTTATTCAATATATTCTCGATATCTCCCCCTGCCATTA
ACAGTACCATTATCCCCTCCCCTCTCCCCTATCCTCCCCTGTTCCCCTCG
GCGTTTTCGACGGACGACTAGCCCTCTTGCGGCAGCACCTCAGGGGAGTT
CTGACATTGGAAGGCGTCTCGGACCCGAGGGGGATCCTCGTGGAAAGCGC
CGTCGCCACTTGCGCAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig111645:927..2145-

>mRNA_H-elongata_contig111645.950.1 ID=mRNA_H-elongata_contig111645.950.1|Name=mRNA_H-elongata_contig111645.950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig111645:927..2145- (Himanthalia elongata Himel1 dioecious)
GGGACGGGGCAGCGCGTGGTGCTGATCGAGGACCTCCCATCGGCGTTCGG
AGAGGAGAAGAGGGCGCGGCTCAGGAGACTCGTGGCCGAGTGTGCACGGT
CCAGCCCGTGCCCCATGATCCTTATCTGGAGCCAGGGGACGGGGCAGCGC
GTGGTGCTGATCGAGGACCTCCCATCGGCGTTCGGAGAGGAGAAGAGGGC
GCGGCTCAGGAGACTCGTGGCCGAGTGTGCACGGTCCAGCCCGTGCCCCA
TGATCCTTATCTGGAGCCAGGCCTCGGAGTCGAGCTCCTACCAGTCTGAG
CTGGAGCAGGTGCTGTCCAGGGAGACGCTAAGGTTACCGGGGGTGCAGGT
GACCACGTGCAACCCCATCAACGCTAGCCTCGGAGTCGAGCTCCTACCAG
TCTGAGCTGGAGCAGGTGCTGTCCAGGGAGACGCTAAGGTTACCGGGGGT
GCAGGTGACCACGTGCAACCCCATCAACGCTACCCTCTTGCGGCAGCACC
TCAGGGGAGTTCTGACATTGGAAGGCGTCTCGGACCCGAGGGGGATCCTC
GTGGAAAGCGCCGTCGCCACTTGCGCAGGTCCCTCTTGCGGCAGCACCTC
AGGGGAGTTCTGACATTGGAAGGCGTCTCGGACCCGAGGGGGATCCTCGT
GGAAAGCGCCGTCGCCACTTGCGCAGGT
back to top