mRNA_H-elongata_contig111576.944.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: D7G3L9_ECTSI (Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L9_ECTSI) HSP 1 Score: 140 bits (352), Expect = 2.440e-37 Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE--------AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
+IMQPGV+EAAERGVYD RVP RLTPTGVAW+ +E A+VD IIWCTGYR+NTSHLSRLG+VR +STV MD R++GET+VPGVFAVG
Sbjct: 315 IIMQPGVIEAAERGVYDQRVPKLARLTPTGVAWEASEDGSIPGGHADVDAIIWCTGYRSNTSHLSRLGLVRPNSTVGMDGREMGETEVPGVFAVG 409
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A1G6U214_9PSED (Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD n=4 Tax=Pseudomonas TaxID=286 RepID=A0A1G6U214_9PSED) HSP 1 Score: 70.9 bits (172), Expect = 1.830e-12 Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMD 213
V+M P VVEA ERGV H V F+R T GV W D ++EVDV+IWCTG++ HL+ LG++ ++ + +D
Sbjct: 239 VVMVPPVVEARERGVL-HAVRPFQRFTRDGVVWPDGMQSEVDVVIWCTGFKPALEHLASLGLITDEGRIEVD 309
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A646MLB4_ACILW (NAD(P)/FAD-dependent oxidoreductase n=28 Tax=Proteobacteria TaxID=1224 RepID=A0A646MLB4_ACILW) HSP 1 Score: 69.7 bits (169), Expect = 4.670e-12 Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
++M V +A ERG+ R P F T GV W++ A VDV+IWCTG++A +HLS LG+++ D T+A+ ++ VP ++ VG
Sbjct: 238 IVMIDSVKDARERGILQSRRP-FSAFTEHGVIWEDGSTAHVDVVIWCTGFKAALNHLSSLGIIQPDQTIAV--QNGRSVQVPNLWLVG 322
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A4R7VVN6_9PSEU (Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Actinophytocola oryzae TaxID=502181 RepID=A0A4R7VVN6_9PSEU) HSP 1 Score: 68.6 bits (166), Expect = 1.230e-11 Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 7 MQPGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
+ P VVEA RG+ R P F RL PTGVAW D A +VDVI+WCTG+RA HL+ LG+ + MD V P V VG
Sbjct: 243 LTPEVVEARHRGLLARR-PMFDRLVPTGVAWADGATLDVDVILWCTGWRAALEHLAPLGLRGPGGGIVMDGTRV--VTEPRVHLVG 325
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A1I1S3T5_9ACTN (Pyridine nucleotide-disulphide oxidoreductase n=5 Tax=Klenkia TaxID=2183612 RepID=A0A1I1S3T5_9ACTN) HSP 1 Score: 68.2 bits (165), Expect = 1.610e-11 Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 19 VVEAAERGVYDHRVPAFKRLTPTGVAWDEAEAE--VDVIIWCTGYRANTSHLSRL-------GVVREDSTVAMDPR 219
V A ERGV D R PAF R+TPTGVAWD+ E VDV++W TG+RA HL+ L G+V E + V +PR
Sbjct: 237 VRRARERGVLDRR-PAFDRMTPTGVAWDDPAGELAVDVVLWATGFRAALDHLAPLHLRAPGGGIVVEGTRVVAEPR 311
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: D6Z8D5_SEGRD (Flavin-containing monooxygenase FMO n=2 Tax=Segniliparus rotundus TaxID=286802 RepID=D6Z8D5_SEGRD) HSP 1 Score: 67.0 bits (162), Expect = 4.640e-11 Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEA-EAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPR 219
++ P + EA RGV + R+P F+RLTP+G W++ +VDVI+WCTG+RAN HL+ LG+ +A+ R
Sbjct: 260 LVWTPQLREAEARGVLE-RLPMFQRLTPSGAQWEDCTRVDVDVILWCTGFRANLGHLAPLGLRSPGGGIALTGR 332
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: UPI00094E8DDC (uncharacterized protein LOC109534505 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E8DDC) HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10 Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 10 QPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAM 210
Q V +A ERG+ R P F T GV W++ A VDV+IWCTG++A +HLS LG+++ D T+A+
Sbjct: 132 QQEVKDARERGILQSRRP-FSAFTEHGVIWEDGSTAHVDVVIWCTGFKAALNHLSSLGIIQPDQTIAV 198
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: UPI0018156BC9 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Nonomuraea sp. TaxID=1883105 RepID=UPI0018156BC9) HSP 1 Score: 64.7 bits (156), Expect = 2.900e-10 Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 13 PGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRL-------GVVREDSTVAMDPR 219
P V+ A E+G D R+P F R+TP GVAW E AEVDVIIW TG+R+ HL+RL G+ + + V +PR
Sbjct: 240 PVVLSALEKGALD-RLPMFARITPGGVAWASGETAEVDVIIWATGFRSALDHLARLRLREPGGGIKLDGTRVVKEPR 315
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A0L8K9X7_STRVR (Pyridine nucleotide-disulfide oxidoreductase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A0L8K9X7_STRVR) HSP 1 Score: 64.7 bits (156), Expect = 2.990e-10 Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 7 MQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRL------GVVREDSTVAM 210
+ + +A ERG+ D R+P F R+TPTGVAWD+ A+VDVI+W TG+RA HL+ L G VR + T A+
Sbjct: 247 LNDAIRDARERGILD-RLPMFDRITPTGVAWDDGRTADVDVILWATGFRAAIDHLTPLRLREPGGGVRVEGTRAV 320
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A837ZZY9_9MYCO (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Mycobacteroides sp. LB1 TaxID=2750814 RepID=A0A837ZZY9_9MYCO) HSP 1 Score: 64.7 bits (156), Expect = 3.000e-10 Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 13 PGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPR 219
P + EA++RGV R P F R+TPTGVAW D + +VDVI+WCTG+R HLS L + + M R
Sbjct: 255 PDIAEASQRGVLARR-PMFTRITPTGVAWPDGSSLDVDVILWCTGFRHALDHLSPLRLRNSRGGITMTGR 323 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111576.944.1 >prot_H-elongata_contig111576.944.1 ID=prot_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp MQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAEAEVDVIIWCTGYRANback to top mRNA from alignment at H-elongata_contig111576:1534..1866+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111576.944.1 ID=mRNA_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig111576:1534..1866+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111576:1534..1866+ >mRNA_H-elongata_contig111576.944.1 ID=mRNA_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig111576:1534..1866+ (Himanthalia elongata Himel1 dioecious)back to top |