mRNA_H-elongata_contig111529.943.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI) HSP 1 Score: 158 bits (400), Expect = 5.850e-43 Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 1
Query: 1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VA+VSAKQ++GL+ LLEKILLQSEVLELKSNP R+AEGV+IEA M++GLGTVGTVLIQRGTLRVGD+FVAG AWGRV+ALID GRRIKEAGPS PVQV
Sbjct: 655 VAMVSAKQKSGLDELLEKILLQSEVLELKSNPDRSAEGVIIEARMERGLGTVGTVLIQRGTLRVGDIFVAGGAWGRVKALIDHQGRRIKEAGPSTPVQV 753
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK) HSP 1 Score: 140 bits (354), Expect = 7.360e-37 Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSAKQR GL+ LLEK+LLQ+E+L+L++NP RAA+G VIEA +++GLG VGT LIQRGTLRVGDVF+AG +WG+VRAL+D G RIKEAGPS+PVQV
Sbjct: 363 VSAKQRLGLDDLLEKVLLQAELLDLRANPDRAAQGAVIEARIERGLGAVGTTLIQRGTLRVGDVFLAGASWGKVRALLDTEGNRIKEAGPSVPVQV 458
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.700e-36 Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1
Query: 1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
V VSAK + GL+ LL+KILLQ+EVLELK+NP RAA+GVVIEA MK+GLGTV T LIQRGTL++GD+FVAG +WG+VR L++ TG RI EAGPS PVQV
Sbjct: 217 VGKVSAKNKDGLDDLLDKILLQAEVLELKANPNRAAQGVVIEAGMKQGLGTVATTLIQRGTLKIGDIFVAGASWGKVRLLMNHTGARITEAGPSTPVQV 315
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A6A7Y3B3_9HYPH (Translation initiation factor IF-2 n=1 Tax=Segnochrobactrum spirostomi TaxID=2608987 RepID=A0A6A7Y3B3_9HYPH) HSP 1 Score: 136 bits (343), Expect = 2.870e-35 Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 7 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
LVSA QRT L+GLLE ILLQSEVLELK+NP R AEG VIEA + KG G V TVL+QRGTLRVGD+ +AG WGRVRAL++D G ++KEAGPS PV+V
Sbjct: 662 LVSATQRTNLDGLLEAILLQSEVLELKANPDRPAEGSVIEAKLDKGRGPVATVLVQRGTLRVGDILIAGTEWGRVRALVNDRGEQVKEAGPSTPVEV 758
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1M7ZJ59_9HYPH (Translation initiation factor IF-2 n=1 Tax=Pseudoxanthobacter soli DSM 19599 TaxID=1123029 RepID=A0A1M7ZJ59_9HYPH) HSP 1 Score: 136 bits (342), Expect = 3.910e-35 Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 7 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
LVSAK+RT L+GLLE ILLQ+EVLELK+NP R AEG+VIEA + KG G V TVL+QRGTL GD+ +AG WGRVRALIDD G ++K AGPSMPV+V
Sbjct: 683 LVSAKERTNLDGLLEAILLQAEVLELKANPDRPAEGMVIEAKLDKGRGPVATVLVQRGTLNAGDILIAGAEWGRVRALIDDHGAQVKSAGPSMPVEV 779
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A3R9X973_9SPHN (Translation initiation factor IF-2 n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A3R9X973_9SPHN) HSP 1 Score: 134 bits (336), Expect = 2.470e-34 Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSA Q+T L+GLL+ I LQ+E+LEL++NPARAAEG VIEA + KG G + TVL+QRGTLRVGD+FV G + GRVRA+IDD GR++KEAGPSMPV+V
Sbjct: 496 VSALQKTNLDGLLDAIALQAEILELRANPARAAEGTVIEAKLDKGRGPLATVLVQRGTLRVGDIFVVGASSGRVRAMIDDHGRQVKEAGPSMPVEV 591
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1N7JMV7_9PROT (Translation initiation factor IF-2 n=1 Tax=Insolitispirillum peregrinum TaxID=80876 RepID=A0A1N7JMV7_9PROT) HSP 1 Score: 133 bits (335), Expect = 3.420e-34 Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSAK+R L+ L E ILLQ+E+LELK+NP R AEG ++EA M+KG G+V TVL++RGTLRVGD+FVAG WGRVRA+IDD G R++EAGPSMPV++
Sbjct: 576 VSAKKRLNLDKLEEAILLQAEILELKANPNRLAEGTIVEAKMEKGRGSVATVLVKRGTLRVGDIFVAGAEWGRVRAMIDDHGNRVEEAGPSMPVEI 671
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A8J6YHG7_9PROT (Translation initiation factor IF-2 n=1 Tax=Phaeovibrio sulfidiphilus TaxID=1220600 RepID=A0A8J6YHG7_9PROT) HSP 1 Score: 133 bits (334), Expect = 4.610e-34 Identity = 65/96 (67.71%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSAK+R LEGL E ILLQ+E+L+LK+NP +AEGVVIEA M+KG G+V TVL+QRGTL+VGD+FVAG WGRVRAL+D+ GRR+ +A P+MPV+V
Sbjct: 498 VSAKKRINLEGLEEAILLQAEILDLKANPDHSAEGVVIEAKMEKGRGSVATVLVQRGTLKVGDIFVAGCEWGRVRALVDENGRRVHKATPAMPVEV 593
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: IF2_MAGSA (Translation initiation factor IF-2 n=6 Tax=Magnetospirillum TaxID=13134 RepID=IF2_MAGSA) HSP 1 Score: 133 bits (334), Expect = 4.630e-34 Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSAK+R LE L E ILLQ+E+L+LK+NP RAA+GVV+EA M+KG G+V TVL+Q+GTL+VG+VFVAG WGRVRAL+DD G IKEAGPS PV+V
Sbjct: 516 VSAKKRLNLEKLEEAILLQAEILDLKANPTRAAQGVVVEAKMEKGRGSVATVLVQKGTLKVGEVFVAGAEWGRVRALVDDHGNSIKEAGPSTPVEV 611
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A286G945_9PROT (Translation initiation factor IF-2 n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286G945_9PROT) HSP 1 Score: 132 bits (333), Expect = 6.340e-34 Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
VSAK+R LE L E ILLQSE+L+LK+NP R AEG V+EA M+KG G+V TVLI+RGTLRVGD+FVAG WGRVRA+IDD G R++EAGP+ PV+V
Sbjct: 541 VSAKKRLNLEKLEEAILLQSEILDLKANPNRMAEGTVVEAKMEKGRGSVATVLIRRGTLRVGDIFVAGTEWGRVRAMIDDHGNRVEEAGPAFPVEV 636 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111529.943.1 >prot_H-elongata_contig111529.943.1 ID=prot_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGback to top mRNA from alignment at H-elongata_contig111529:262..1264- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111529.943.1 ID=mRNA_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig111529:262..1264- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111529:262..1264- >mRNA_H-elongata_contig111529.943.1 ID=mRNA_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig111529:262..1264- (Himanthalia elongata Himel1 dioecious)back to top |