prot_H-elongata_contig111529.943.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig111529.943.1
Unique Name	prot_H-elongata_contig111529.943.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	99

Homology

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.850e-43
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 0

Query:    1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VA+VSAKQ++GL+ LLEKILLQSEVLELKSNP R+AEGV+IEA M++GLGTVGTVLIQRGTLRVGD+FVAG AWGRV+ALID  GRRIKEAGPS PVQV
Sbjct:  655 VAMVSAKQKSGLDELLEKILLQSEVLELKSNPDRSAEGVIIEARMERGLGTVGTVLIQRGTLRVGDIFVAGGAWGRVKALIDHQGRRIKEAGPSTPVQV 753

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK)

HSP 1 Score: 140 bits (354), Expect = 7.360e-37
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSAKQR GL+ LLEK+LLQ+E+L+L++NP RAA+G VIEA +++GLG VGT LIQRGTLRVGDVF+AG +WG+VRAL+D  G RIKEAGPS+PVQV
Sbjct:  363 VSAKQRLGLDDLLEKVLLQAELLDLRANPDRAAQGAVIEARIERGLGAVGTTLIQRGTLRVGDVFLAGASWGKVRALLDTEGNRIKEAGPSVPVQV 458

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.700e-36
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 0

Query:    1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            V  VSAK + GL+ LL+KILLQ+EVLELK+NP RAA+GVVIEA MK+GLGTV T LIQRGTL++GD+FVAG +WG+VR L++ TG RI EAGPS PVQV
Sbjct:  217 VGKVSAKNKDGLDDLLDKILLQAEVLELKANPNRAAQGVVIEAGMKQGLGTVATTLIQRGTLKIGDIFVAGASWGKVRLLMNHTGARITEAGPSTPVQV 315

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A6A7Y3B3_9HYPH (Translation initiation factor IF-2 n=1 Tax=Segnochrobactrum spirostomi TaxID=2608987 RepID=A0A6A7Y3B3_9HYPH)

HSP 1 Score: 136 bits (343), Expect = 2.870e-35
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0

Query:    3 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            LVSA QRT L+GLLE ILLQSEVLELK+NP R AEG VIEA + KG G V TVL+QRGTLRVGD+ +AG  WGRVRAL++D G ++KEAGPS PV+V
Sbjct:  662 LVSATQRTNLDGLLEAILLQSEVLELKANPDRPAEGSVIEAKLDKGRGPVATVLVQRGTLRVGDILIAGTEWGRVRALVNDRGEQVKEAGPSTPVEV 758

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1M7ZJ59_9HYPH (Translation initiation factor IF-2 n=1 Tax=Pseudoxanthobacter soli DSM 19599 TaxID=1123029 RepID=A0A1M7ZJ59_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 3.910e-35
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 0

Query:    3 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            LVSAK+RT L+GLLE ILLQ+EVLELK+NP R AEG+VIEA + KG G V TVL+QRGTL  GD+ +AG  WGRVRALIDD G ++K AGPSMPV+V
Sbjct:  683 LVSAKERTNLDGLLEAILLQAEVLELKANPDRPAEGMVIEAKLDKGRGPVATVLVQRGTLNAGDILIAGAEWGRVRALIDDHGAQVKSAGPSMPVEV 779

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A3R9X973_9SPHN (Translation initiation factor IF-2 n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A3R9X973_9SPHN)

HSP 1 Score: 134 bits (336), Expect = 2.470e-34
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSA Q+T L+GLL+ I LQ+E+LEL++NPARAAEG VIEA + KG G + TVL+QRGTLRVGD+FV G + GRVRA+IDD GR++KEAGPSMPV+V
Sbjct:  496 VSALQKTNLDGLLDAIALQAEILELRANPARAAEGTVIEAKLDKGRGPLATVLVQRGTLRVGDIFVVGASSGRVRAMIDDHGRQVKEAGPSMPVEV 591

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1N7JMV7_9PROT (Translation initiation factor IF-2 n=1 Tax=Insolitispirillum peregrinum TaxID=80876 RepID=A0A1N7JMV7_9PROT)

HSP 1 Score: 133 bits (335), Expect = 3.420e-34
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSAK+R  L+ L E ILLQ+E+LELK+NP R AEG ++EA M+KG G+V TVL++RGTLRVGD+FVAG  WGRVRA+IDD G R++EAGPSMPV++
Sbjct:  576 VSAKKRLNLDKLEEAILLQAEILELKANPNRLAEGTIVEAKMEKGRGSVATVLVKRGTLRVGDIFVAGAEWGRVRAMIDDHGNRVEEAGPSMPVEI 671

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A8J6YHG7_9PROT (Translation initiation factor IF-2 n=1 Tax=Phaeovibrio sulfidiphilus TaxID=1220600 RepID=A0A8J6YHG7_9PROT)

HSP 1 Score: 133 bits (334), Expect = 4.610e-34
Identity = 65/96 (67.71%), Postives = 82/96 (85.42%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSAK+R  LEGL E ILLQ+E+L+LK+NP  +AEGVVIEA M+KG G+V TVL+QRGTL+VGD+FVAG  WGRVRAL+D+ GRR+ +A P+MPV+V
Sbjct:  498 VSAKKRINLEGLEEAILLQAEILDLKANPDHSAEGVVIEAKMEKGRGSVATVLVQRGTLKVGDIFVAGCEWGRVRALVDENGRRVHKATPAMPVEV 593

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: IF2_MAGSA (Translation initiation factor IF-2 n=6 Tax=Magnetospirillum TaxID=13134 RepID=IF2_MAGSA)

HSP 1 Score: 133 bits (334), Expect = 4.630e-34
Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSAK+R  LE L E ILLQ+E+L+LK+NP RAA+GVV+EA M+KG G+V TVL+Q+GTL+VG+VFVAG  WGRVRAL+DD G  IKEAGPS PV+V
Sbjct:  516 VSAKKRLNLEKLEEAILLQAEILDLKANPTRAAQGVVVEAKMEKGRGSVATVLVQKGTLKVGEVFVAGAEWGRVRALVDDHGNSIKEAGPSTPVEV 611

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BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A286G945_9PROT (Translation initiation factor IF-2 n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286G945_9PROT)

HSP 1 Score: 132 bits (333), Expect = 6.340e-34
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 0

Query:    4 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 99
            VSAK+R  LE L E ILLQSE+L+LK+NP R AEG V+EA M+KG G+V TVLI+RGTLRVGD+FVAG  WGRVRA+IDD G R++EAGP+ PV+V
Sbjct:  541 VSAKKRLNLEKLEEAILLQSEILDLKANPNRMAEGTVVEAKMEKGRGSVATVLIRRGTLRVGDIFVAGTEWGRVRAMIDDHGNRVEEAGPAFPVEV 636

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot

BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJE9_ECTSI	5.850e-43	82.83	PTIF2, plastid translation intiation factor 2 n=2 ...	[more]
A0A7S3Y8J2_HETAK	7.360e-37	71.88	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A835ZAQ9_9STRA	1.700e-36	70.71	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A6A7Y3B3_9HYPH	2.870e-35	71.13	Translation initiation factor IF-2 n=1 Tax=Segnoch...	[more]
A0A1M7ZJ59_9HYPH	3.910e-35	70.10	Translation initiation factor IF-2 n=1 Tax=Pseudox...	[more]
A0A3R9X973_9SPHN	2.470e-34	68.75	Translation initiation factor IF-2 n=1 Tax=Sphingo...	[more]
A0A1N7JMV7_9PROT	3.420e-34	66.67	Translation initiation factor IF-2 n=1 Tax=Insolit...	[more]
A0A8J6YHG7_9PROT	4.610e-34	67.71	Translation initiation factor IF-2 n=1 Tax=Phaeovi...	[more]
IF2_MAGSA	4.630e-34	68.75	Translation initiation factor IF-2 n=6 Tax=Magneto...	[more]
A0A286G945_9PROT	6.340e-34	68.75	Translation initiation factor IF-2 n=1 Tax=Caenisp...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.30.10		coord: 30..99 e-value: 6.1E-28 score: 99.3
None	No IPR available	PANTHER	PTHR43381:SF5	TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL	coord: 4..99
IPR015760	Translation initiation factor IF- 2	PANTHER	PTHR43381	FAMILY NOT NAMED	coord: 4..99
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 34..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig111529	contig	H-elongata_contig111529:262..1264 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig111529.943.1	mRNA_H-elongata_contig111529.943.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig111529 262..1264 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig111529.943.1 ID=prot_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLG
TVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015760	TIF_IF2
IPR009000	Transl_B-barrel_sf