mRNA_H-elongata_contig111527.942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111527.942.1
Unique NamemRNA_H-elongata_contig111527.942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.900e-45
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:   19 VEQALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACMAVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLALGFTGRGLRPVLTQV 342
            +++A+RVVLGG GG PS D KERLRATEWLHSF+RRDDAW AC+AVLGAPRG+  NQV   +Q+FASQALLYKCRRRRAAI+ +DVG LL+LAL FTGRGLR VL Q+
Sbjct:   23 LKEAVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVAVLGAPRGVADNQVGLNEQIFASQALLYKCRRRRAAISGDDVGCLLQLALQFTGRGLRAVLVQL 130
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BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-19
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  151 AVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLALGFTGRGLRPVLTQ 339
            AVLGAPRG+  NQV   +Q+FASQALLYKCRRR+AAI+ +DVG LL+LAL FTGRGLR VL Q
Sbjct:   25 AVLGAPRGVADNQVGLNEQIFASQALLYKCRRRKAAISGDDVGCLLQLALQFTGRGLRAVLVQ 87
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BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: A0A6H5KUP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.870e-15
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 ALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACMA 153
            A+RVVLGG GG PS D KERLRATEWLHSF+RRDDAW AC+A
Sbjct:   65 AVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVA 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSA2_ECTSI2.900e-4574.07Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE1.700e-1973.02Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUP5_9PHAE2.870e-1580.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111527contigH-elongata_contig111527:179..1609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.3e-38
Seed eggNOG ortholog2880.D7FSA2
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExportin-1/Importin-beta-like
Ec32 orthologEc-05_004800.1
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.6818354-CDS-H-elongata_contig111527:178..3321622929638.6818354-CDS-H-elongata_contig111527:178..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111527 179..332 +
1691679101.2622688-CDS-H-elongata_contig111527:178..3321691679101.2622688-CDS-H-elongata_contig111527:178..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111527 179..332 +
1622929638.6974874-CDS-H-elongata_contig111527:1421..16091622929638.6974874-CDS-H-elongata_contig111527:1421..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111527 1422..1609 +
1691679101.2722485-CDS-H-elongata_contig111527:1421..16091691679101.2722485-CDS-H-elongata_contig111527:1421..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111527 1422..1609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111527.942.1prot_H-elongata_contig111527.942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111527 179..1609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111527.942.1

>prot_H-elongata_contig111527.942.1 ID=prot_H-elongata_contig111527.942.1|Name=mRNA_H-elongata_contig111527.942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MGFRADVEQALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACM
AVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLAL
GFTGRGLRPVLTQV
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mRNA from alignment at H-elongata_contig111527:179..1609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111527.942.1 ID=mRNA_H-elongata_contig111527.942.1|Name=mRNA_H-elongata_contig111527.942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1431bp|location=Sequence derived from alignment at H-elongata_contig111527:179..1609+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTCGTGCGGACGTTGAACAGGCGTTGCGGGTTGTGCTAGGCGG
CGGCGGTGGTGCCCCCAGCCCAGATTCGAAAGAGCGCCTGAGGGCCACGG
AATGGCTGCACAGCTTCCGTCGGAGAGATGACGCCTGGGATGCCTGCATG
GCAGGTAACAAATCTTCTCGCACGACAAGGGCCTGCTGCAGAAAGCACCG
CACCGCACCCGGGGATGGGGGTGGGTAATCCCCGGGCCGTTTTTATTTCC
CTGCTAGTATACTTCAAAAAAGTTGATTTTGCGATACCGCCGGCACTGAC
ACAAACGCATCAATTCGACTCGGTCCCGCTCGGTCCTGTGTTGGGGCTTT
GACAAGATACCGCGAGGGATAATTTTTTGTATATGTTGTATATACCCCCA
GGGTGTTGTGTTCTTACGCCTTACCCTGAATATGTATATATATATATATA
TATATATATATTTGTATTTTCTGCTGGACTGCTTGGAAGGACGTTTCTGA
TGGTTGGGTTGTCGTCGATGAATTTTCCATGAATTTTCCATATTCGGAGA
CAGTGAAGATGGGGTGTGATGCTCGGATCGAGTGCTGCTTTTCGCGATGG
GGACGTAAGAGGATGACGACTTTTTCCCTTCCCCTGCCCCCTCCCTCCAT
CAATCTCTCCGAGACCCTGACTAGCCGACCAGTCCAAAGATTGGGGGGGG
ATGTAACCGTCGTATCCCCGGTTGCGGCGCTTCATATGTGATATCTGAAT
ACAACAAAAAAGGGGAAGGATAAGTTTTGTCCCCAGGACGGGAAAAAAAT
AGCATGTCCCCTCCACGAATCGGGGGCGTTCTAGTAAGTTCACCCCTCCC
CCCTATCGTTAGATTGCTCAGTCGACTACCAAGCGCTCTACCGCGTAACT
GTGTTTACTAACTGCGAATAACGAGGGGTTGTGTTATAGTGGCGTAGACC
TTCGGTGGCACGTGTTTTGTCACGCTGGAAGGTTTCCAACCAACGAGGCG
TGTGTTCCAAATACTCTCGCTTGGAAACGATCCTCTACATCGCGTGAATG
AGATCATATGCTGCTTGGGGAGTAACAACAGGTCGCTCCCAAAGCGGGAA
CCCTGTCGAGACGGTAGAACCAATTTTGCTTTATTTCATGTAAACCTTAC
GGTTAAAACCCCCAACAATTGCGACCATTTTATTATTATTATTATTGAGA
ATCAAAGCTCATTGAATATATCGCAAATCGTCTGCTGCGGCAGTACTCGG
GGCACCGAGGGGACTCGGGATGAACCAGGTCACCTTCGAAGACCAGGTGT
TTGCCAGCCAGGCTCTATTGTACAAGTGTCGACGGCGGCGAGCGGCGATT
ACGTCGGAAGACGTCGGTCGCTTGTTGCGCCTTGCGCTCGGATTTACGGG
CAGAGGCCTACGGCCGGTGTTGACGCAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig111527:179..1609+

>mRNA_H-elongata_contig111527.942.1 ID=mRNA_H-elongata_contig111527.942.1|Name=mRNA_H-elongata_contig111527.942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig111527:179..1609+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTCGTGCGGACGTTGAACAGGCGTTGCGGGTTGTGCTAGGCGG
CGGCGGTGGTGCCCCCAGCCCAGATTCGAAAGAGCGCCTGAGGGCCACGG
AATGGCTGCACAGCTTCCGTCGGAGAGATGACGCCTGGGATGCCTGCATG
GCAGATGGGGTTTCGTGCGGACGTTGAACAGGCGTTGCGGGTTGTGCTAG
GCGGCGGCGGTGGTGCCCCCAGCCCAGATTCGAAAGAGCGCCTGAGGGCC
ACGGAATGGCTGCACAGCTTCCGTCGGAGAGATGACGCCTGGGATGCCTG
CATGGCAGTACTCGGGGCACCGAGGGGACTCGGGATGAACCAGGTCACCT
TCGAAGACCAGGTGTTTGCCAGCCAGGCTCTATTGTACAAGTGTCGACGG
CGGCGAGCGGCGATTACGTCGGAAGACGTCGGTCGCTTGTTGCGCCTTGC
GCTCGGATTTACGGGCAGAGGCCTACGGCCGGTGTTGACGCAGGTCTACT
CGGGGCACCGAGGGGACTCGGGATGAACCAGGTCACCTTCGAAGACCAGG
TGTTTGCCAGCCAGGCTCTATTGTACAAGTGTCGACGGCGGCGAGCGGCG
ATTACGTCGGAAGACGTCGGTCGCTTGTTGCGCCTTGCGCTCGGATTTAC
GGGCAGAGGCCTACGGCCGGTGTTGACGCAGGTC
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