mRNA_H-elongata_contig111516.940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111516.940.1
Unique NamemRNA_H-elongata_contig111516.940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A6H5L115_9PHAE (Lactoylglutathione lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L115_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.220e-23
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   10 ALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            ALGMTLLRRRSLLP KT QA WMGYGEE +STV+EL+YEYNREKIDRG GYGQ  V
Sbjct:  258 ALGMTLLRRRSLLPQKTQQACWMGYGEEDDSTVLELVYEYNREKIDRGDGYGQIAV 313
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A3YU93_9SYNE (Lactoylglutathione lyase n=1 Tax=Synechococcus sp. WH 5701 TaxID=69042 RepID=A3YU93_9SYNE)

HSP 1 Score: 53.1 bits (126), Expect = 3.570e-7
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 QALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            + LGM LLRRR   P+      ++GYGEE +STVIEL + ++    + GTGYG   +
Sbjct:   22 EVLGMRLLRRREY-PSGRFTLAFLGYGEESDSTVIELTHNWDTTSYEIGTGYGHIAI 77
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A1W1Y0J4_9NEIS (Lactoylglutathione lyase n=1 Tax=Andreprevotia lacus DSM 23236 TaxID=1121001 RepID=A0A1W1Y0J4_9NEIS)

HSP 1 Score: 52.4 bits (124), Expect = 6.460e-7
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   13 LGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            LGM LLR+R   P       ++GYGEE  +TVIEL + ++ EK D G GYG   +
Sbjct:   24 LGMQLLRKRDY-PDGRFTLAFVGYGEESNTTVIELTHNWDTEKYDLGNGYGHIAI 77
[Close]
BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: UPI000830804E (lactoylglutathione lyase n=1 Tax=Snodgrassella sp. CFCC 13594 TaxID=1775559 RepID=UPI000830804E)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   13 LGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            LGM LLR++     K   A ++GYGEE  +TV+EL Y +  E+ D GTGYG   +
Sbjct:   24 LGMKLLRQQDYPEGKFTLA-FVGYGEESNTTVLELTYNWETERYDLGTGYGHIAI 77
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A352AR16_9CYAN (Aldoketomutase n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AR16_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 6.630e-6
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   13 LGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            LGM LLR++   P+      ++GYG+E + TVIEL Y + R+K D G  YG   +
Sbjct:   24 LGMKLLRKKDY-PSGEFTLAFVGYGDESDHTVIELTYNWGRDKYDLGDAYGHIAL 77
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A6V1WWG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WWG1_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 7.580e-6
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    7 QALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARVLQYQILR 198
            +ALGM LLR+RSLLP   A   ++GYG E E  +IEL Y Y  +KI+ GT      +    + +
Sbjct:  199 EALGMKLLRKRSLLPEIAAIRGFVGYGSEDEF-LIELHYNYGVDKIEPGTRLDSVGIYTLDVAK 261
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BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A1F3X7V1_9PROT (Lactoylglutathione lyase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3X7V1_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 7.660e-6
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    7 QALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            + LGM LLRRR     K   A ++GYG+E ES V+EL Y +   K D GT +G   +
Sbjct:   22 KVLGMKLLRRRDFPEGKFTLA-FVGYGDESESAVLELTYNWGVGKYDLGTAFGHIAI 77
[Close]
BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A1T4R804_9GAMM (Lactoylglutathione lyase n=1 Tax=Oceanospirillum multiglobuliferum TaxID=64969 RepID=A0A1T4R804_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 8.050e-6
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    7 QALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            Q +GMTLLRR S  P       ++GYGEE ++TV+EL Y +  E  D G  +G   V
Sbjct:   22 QVMGMTLLRR-SENPEYQYTLAFLGYGEETDTTVLELTYNWGVESYDMGKAFGHLAV 77
[Close]
BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A0A2A2TQB1_9CYAN (Aldoketomutase n=2 Tax=Calothrix TaxID=1186 RepID=A0A2A2TQB1_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 9.170e-6
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    7 QALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            + LGM LLRR+   P       ++GYG+E ++TV+EL Y + +EK + G  YG   +
Sbjct:   22 EILGMKLLRRKDY-PGGEFTLAFVGYGDESDNTVLELTYNWGKEKYELGDAYGHIAI 77
[Close]
BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Match: A5GPD9_SYNPW (Lactoylglutathione lyase n=1 Tax=Synechococcus sp. (strain WH7803) TaxID=32051 RepID=A5GPD9_SYNPW)

HSP 1 Score: 50.1 bits (118), Expect = 9.640e-6
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   13 LGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDRGTGYGQARV 177
            LGM LLRR+   P+      ++GYG+E ESTV+EL + ++  + D G+GYG   +
Sbjct:   63 LGMRLLRRKDY-PSGRFTLAFVGYGDEAESTVLELTHNWDTAEYDLGSGYGHIAL 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111516.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L115_9PHAE2.220e-2382.14Lactoylglutathione lyase n=2 Tax=Ectocarpus TaxID=... [more]
A3YU93_9SYNE3.570e-743.86Lactoylglutathione lyase n=1 Tax=Synechococcus sp.... [more]
A0A1W1Y0J4_9NEIS6.460e-745.45Lactoylglutathione lyase n=1 Tax=Andreprevotia lac... [more]
UPI000830804E1.020e-645.45lactoylglutathione lyase n=1 Tax=Snodgrassella sp.... [more]
A0A352AR16_9CYAN6.630e-641.82Aldoketomutase n=1 Tax=Cyanobacteria bacterium UBA... [more]
A0A6V1WWG1_HETAK7.580e-642.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1F3X7V1_9PROT7.660e-643.86Lactoylglutathione lyase n=2 Tax=unclassified Beta... [more]
A0A1T4R804_9GAMM8.050e-643.86Lactoylglutathione lyase n=1 Tax=Oceanospirillum m... [more]
A0A2A2TQB1_9CYAN9.170e-638.60Aldoketomutase n=2 Tax=Calothrix TaxID=1186 RepID=... [more]
A5GPD9_SYNPW9.640e-641.82Lactoylglutathione lyase n=1 Tax=Synechococcus sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111516contigH-elongata_contig111516:1751..1951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog2880.D7FRI2
Preferred nameGLO1
KEGG rclassRC00004,RC00360,RC00740
KEGG koko:K01759,ko:K05359
KEGG ReactionR00691,R01373,R02530
KEGG Pathwayko00400,ko00620,ko01100,ko01110,ko01130,ko01230,map00400,map00620,map01100,map01110,map01130,map01230
KEGG ModuleM00024
GOsGO:0003674,GO:0003824,GO:0004462,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005829,GO:0005886,GO:0006081,GO:0006082,GO:0006089,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009438,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0016020,GO:0016151,GO:0016829,GO:0016846,GO:0019243,GO:0019752,GO:0019863,GO:0019865,GO:0031967,GO:0031975,GO:0031977,GO:0032787,GO:0042180,GO:0042182,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046185,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051596,GO:0061727,GO:0071704,GO:0071944,GO:1901575,GO:1901615
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,KOG2943@2759
Ec32 ortholog descriptionGlyoxalase I
Ec32 orthologEc-09_000050.1
EC4.2.1.51,4.2.1.91,4.4.1.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.4910343-CDS-H-elongata_contig111516:1750..19511622929638.4910343-CDS-H-elongata_contig111516:1750..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111516 1751..1951 +
1691679101.177771-CDS-H-elongata_contig111516:1750..19511691679101.177771-CDS-H-elongata_contig111516:1750..1951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111516 1751..1951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111516.940.1prot_H-elongata_contig111516.940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111516 1751..1951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111516.940.1

>prot_H-elongata_contig111516.940.1 ID=prot_H-elongata_contig111516.940.1|Name=mRNA_H-elongata_contig111516.940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MPQALGMTLLRRRSLLPTKTAQATWMGYGEEGESTVIELLYEYNREKIDR
GTGYGQARVLQYQILR*
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mRNA from alignment at H-elongata_contig111516:1751..1951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111516.940.1 ID=mRNA_H-elongata_contig111516.940.1|Name=mRNA_H-elongata_contig111516.940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig111516:1751..1951+ (Himanthalia elongata Himel1 dioecious)
ATGCCACAGGCACTGGGGATGACCTTGTTGCGGCGTCGGTCCCTTCTGCC
CACCAAGACGGCGCAAGCAACATGGATGGGGTACGGGGAAGAGGGCGAGA
GCACCGTGATCGAGCTGCTTTACGAGTACAACCGAGAGAAGATCGACCGC
GGGACCGGTTACGGGCAGGCAAGGGTGTTACAATATCAAATATTGAGATA
A
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Coding sequence (CDS) from alignment at H-elongata_contig111516:1751..1951+

>mRNA_H-elongata_contig111516.940.1 ID=mRNA_H-elongata_contig111516.940.1|Name=mRNA_H-elongata_contig111516.940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig111516:1751..1951+ (Himanthalia elongata Himel1 dioecious)
ATGCCACAGGCACTGGGGATGACCTTGTTGCGGCGTCGGTCCCTTCTGCC
CACCAAGACGGCGCAAGCAACATGGATGGGGTACGGGGAAGAGGGCGAGA
GCACCGTGATCGAGCTGCTTTACGAGTACAACCGAGAGAAGATCGACCGC
GGGACCGGTTACGGGCAGGCAAGGGTGTTACAATATCAAATATTGAGATA
AATGCCACAGGCACTGGGGATGACCTTGTTGCGGCGTCGGTCCCTTCTGC
CCACCAAGACGGCGCAAGCAACATGGATGGGGTACGGGGAAGAGGGCGAG
AGCACCGTGATCGAGCTGCTTTACGAGTACAACCGAGAGAAGATCGACCG
CGGGACCGGTTACGGGCAGGCAAGGGTGTTACAATATCAAATATTGAGAT
AA
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