mRNA_H-elongata_contig11137.933.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11137.933.1
Unique NamemRNA_H-elongata_contig11137.933.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11137.933.1 vs. uniprot
Match: D7G079_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.440e-26
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 GTKRPRFCVGHKKKGMVGLKNRPCLFPGCLTRPHYGLSRGRXXXXXXXXXXXXXHLLKESMTLEKERLA 207
            GT RPRFC  HK KGMVGLKNRPCLFPGC TRPHYGLS+GR             HLLKES+ +EKER+A
Sbjct:   84 GTSRPRFCREHKSKGMVGLKNRPCLFPGCTTRPHYGLSKGRAMYCASHKKDGMVHLLKESLNMEKERIA 152
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BLAST of mRNA_H-elongata_contig11137.933.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-19
Identity = 43/70 (61.43%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 GTKRPRFCVGHKKKGMVGLKNRPCLFPGCLTRPHYGLSRGRXXXXXXXXXXXXXHLLKESMTLEKERLAR 210
            GT RPRFC  HK+K MV LKNRPCLFPGC  RPHYGLS GR             HLLKE+  LEKE L R
Sbjct:  273 GTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGLSMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKR 342
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BLAST of mRNA_H-elongata_contig11137.933.1 vs. uniprot
Match: A0A6H5KHQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.010e-10
Identity = 31/55 (56.36%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:   46 MVGLKNRPCLFPGCLTRPHYGLSRGRXXXXXXXXXXXXXHLLKESMTLEKERLAR 210
            MV LKNRPCLFPGC  RPHYG S GR             HLLKE+  LEK  L R
Sbjct:    1 MVSLKNRPCLFPGCDIRPHYGFSMGRAVYCVSHKKDGMVHLLKEAKNLEKGSLER 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11137.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G079_ECTSI3.440e-2666.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G084_ECTSI1.010e-1961.43Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KHQ6_9PHAE4.010e-1056.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11137contigH-elongata_contig11137:146..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.781972-CDS-H-elongata_contig11137:145..2281622929637.781972-CDS-H-elongata_contig11137:145..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11137 146..228 +
1691679100.891061-CDS-H-elongata_contig11137:145..2281691679100.891061-CDS-H-elongata_contig11137:145..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11137 146..228 +
1622929637.8012156-CDS-H-elongata_contig11137:474..6011622929637.8012156-CDS-H-elongata_contig11137:474..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11137 475..601 +
1691679100.9021487-CDS-H-elongata_contig11137:474..6011691679100.9021487-CDS-H-elongata_contig11137:474..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11137 475..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11137.933.1prot_H-elongata_contig11137.933.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11137 146..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11137.933.1

>prot_H-elongata_contig11137.933.1 ID=prot_H-elongata_contig11137.933.1|Name=mRNA_H-elongata_contig11137.933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
GTKRPRFCVGHKKKGMVGLKNRPCLFPGCLTRPHYGLSRGRPMYCASHKK
SGMVHLLKESMTLEKERLAR
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mRNA from alignment at H-elongata_contig11137:146..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11137.933.1 ID=mRNA_H-elongata_contig11137.933.1|Name=mRNA_H-elongata_contig11137.933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig11137:146..601+ (Himanthalia elongata Himel1 dioecious)
GGTACGAAACGACCGAGGTTTTGCGTCGGCCACAAGAAAAAAGGCATGGT
AGGACTCAAGAATCGTCCCTGTCTCTTCCCCGGGTAAGTTGTGCAATCGC
CTATTCAGCATCCCACTGTTTGACCATCTCCCGTACAAGCGGCGGGTGTA
TGCGTGCACCTGTGAGCCCCGGTTATAGTTTTCATATATATGGCAGACAA
TGTTCTGCTTATTGCATAAACACGTCACTAACTCGCCCATTTCCGTAGAG
TATATCTCGTTTTTTCAACGCACATCCATGCAAATGCCTCACCCGCGTGG
ATGATATACCACGTTTGCCTTCCTCGCAGTTGTTTGACCAGACCCCACTA
TGGCCTATCACGGGGGAGGCCTATGTACTGTGCGTCGCACAAAAAGAGCG
GCATGGTTCATTTGCTGAAGGAATCCATGACACTTGAGAAAGAGAGGCTC
GCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig11137:146..601+

>mRNA_H-elongata_contig11137.933.1 ID=mRNA_H-elongata_contig11137.933.1|Name=mRNA_H-elongata_contig11137.933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig11137:146..601+ (Himanthalia elongata Himel1 dioecious)
GGTACGAAACGACCGAGGTTTTGCGTCGGCCACAAGAAAAAAGGCATGGT
AGGACTCAAGAATCGTCCCTGTCTCTTCCCCGGGGTACGAAACGACCGAG
GTTTTGCGTCGGCCACAAGAAAAAAGGCATGGTAGGACTCAAGAATCGTC
CCTGTCTCTTCCCCGGTTGTTTGACCAGACCCCACTATGGCCTATCACGG
GGGAGGCCTATGTACTGTGCGTCGCACAAAAAGAGCGGCATGGTTCATTT
GCTGAAGGAATCCATGACACTTGAGAAAGAGAGGCTCGCGAGGTTGTTTG
ACCAGACCCCACTATGGCCTATCACGGGGGAGGCCTATGTACTGTGCGTC
GCACAAAAAGAGCGGCATGGTTCATTTGCTGAAGGAATCCATGACACTTG
AGAAAGAGAGGCTCGCGAGG
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