mRNA_H-elongata_contig11134.930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11134.930.1
Unique NamemRNA_H-elongata_contig11134.930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A835YXC9_9STRA (GTP cyclohydrolase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.080e-46
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 1
Query:    4 DGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            +GQ+F++K AVEPVWYLPEIA RFG  E+ LRETLFKETNMMYPELVTR DL  FLPPIGGLTIY+FGDP  I DE VPLTVRV+DECNGSDVFGS+
Sbjct:  189 EGQAFVSKAAVEPVWYLPEIARRFGCTELALRETLFKETNMMYPELVTRPDLHVFLPPIGGLTIYIFGDPDTIADESVPLTVRVHDECNGSDVFGSD 285          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A4D9CXZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXZ5_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.190e-45
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 QDGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            +DGQ  +TK A+EPVWYLP +A RF V E KLRETLF ETNMMYPEL+TR D+K FLPPIGG T+Y+FGDP  IPDE VPLT RV+DECNGSDVFGS+
Sbjct:  169 KDGQVNVTKAAIEPVWYLPAVAERFSVSEAKLRETLFVETNMMYPELITRPDIKVFLPPIGGSTVYIFGDPEKIPDESVPLTARVHDECNGSDVFGSD 266          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7S2SSD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSD0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 5.150e-45
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 1
Query:    4 DGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            DGQS I+K AVEPVW+LP IA RFG  E  LRE LF+ETNMMYPEL+TR D+K FLPPIGGLT+Y++GDPALIPDEDV LTVRV+DECNGSDVFGS+
Sbjct:  213 DGQSHISKVAVEPVWHLPGIAERFGCTEQVLRECLFRETNMMYPELITRPDVKVFLPPIGGLTVYIWGDPALIPDEDVELTVRVHDECNGSDVFGSD 309          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: W7T706_9STRA (Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T706_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.060e-44
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 1
Query:    1 QDGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            +DGQ  +TK A+EPVWYLP +A RF V E KLRETLF ETNMMYPEL+TR D+K FLPPIGG T+Y+FGDP  IPDE+VPLT RV+DECNGSDVFGS+
Sbjct:  202 KDGQVNVTKAAIEPVWYLPAVAERFSVSEAKLRETLFVETNMMYPELITRPDIKVFLPPIGGSTVYIFGDPEKIPDENVPLTARVHDECNGSDVFGSD 299          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A6U6N6L8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6N6L8_9DINO)

HSP 1 Score: 155 bits (393), Expect = 2.430e-44
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    4 DGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            DGQSF+TK A+EPVWYLP IA RF V E +LR+++FKETN MYPEL+TR DLK FLPPIGG+T+Y++GDP  IPDE V LT RV+DECNGSDVFGS+
Sbjct:  263 DGQSFVTKAAIEPVWYLPGIAQRFKVSETELRQSIFKETNSMYPELLTRMDLKLFLPPIGGMTVYIWGDPEKIPDESVELTCRVHDECNGSDVFGSD 359          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7S1U4W9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.080e-44
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 1
Query:    7 GQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            GQS ITK A+EPVWYLPE+A RFG  E  LR  LF+ETNMMYPEL+TR D+K FLPPIGG TIY++GDP  IPDE++PLTVRV+DECNGSDVFGS+
Sbjct:  186 GQSIITKAAIEPVWYLPEVARRFGCSEQDLRLALFRETNMMYPELITRTDMKVFLPPIGGCTIYIWGDPNTIPDENIPLTVRVHDECNGSDVFGSD 281          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7R9WIM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIM1_9STRA)

HSP 1 Score: 152 bits (384), Expect = 9.320e-44
Identity = 68/96 (70.83%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    7 GQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            GQS +TK A+EPVWYLPEIA RFG  E  LR+++F+ TN MYPEL+TR D+K FLPPIGGLTIY++GDP  IPDED+ LT RV+DECNGSDVFGS+
Sbjct:   65 GQSVVTKAAIEPVWYLPEIARRFGCTETSLRQSIFRMTNGMYPELITRPDIKIFLPPIGGLTIYIWGDPDTIPDEDIELTCRVHDECNGSDVFGSD 160          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7S2FI45_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI45_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.420e-44
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 QDGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            QDGQS ITK AVEPVW LP IA RFG  E  LRETLFKETNMMYPELVTR DL  FLPP+GGLT+Y++G    IPDE++PLTVRV+DECNGSDVFGS+
Sbjct:  172 QDGQSHITKFAVEPVWNLPGIAERFGCTEANLRETLFKETNMMYPELVTRPDLDTFLPPVGGLTVYVWGSVDAIPDENIPLTVRVHDECNGSDVFGSD 269          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7S2JIP4_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIP4_9DINO)

HSP 1 Score: 157 bits (398), Expect = 1.610e-43
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1
Query:    4 DGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            +GQSF+TK A+EPVWYLP +A RFGV E +LRE+LFKETN MYPEL+TR DLK FLPPIGG+T+Y++GDP  I DE V LTVRV+DECNGSDVFGS+
Sbjct:  295 EGQSFVTKAAIEPVWYLPGVAERFGVTEQRLRESLFKETNSMYPELLTRNDLKLFLPPIGGMTVYIWGDPETIADESVELTVRVHDECNGSDVFGSD 391          
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Match: A0A7S3GY78_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GY78_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.370e-43
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    4 DGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTREDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN 294
            D Q+ +TK A+EPVWYLP +A RF   E  LR+ LFKETNMMYPEL+TR D+K FLPPIGGLTIY++G+P  IPDE +PLTVRV+DECNGSDVFGS+
Sbjct:   53 DAQAMVTKAAIEPVWYLPGVAERFQCTEQALRQALFKETNMMYPELLTRTDIKLFLPPIGGLTIYIWGNPDTIPDESIPLTVRVHDECNGSDVFGSD 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11134.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXC9_9STRA1.080e-4679.38GTP cyclohydrolase N terminal-domain-containing pr... [more]
A0A4D9CXZ5_9STRA2.190e-4573.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2SSD0_9STRA5.150e-4577.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T706_9STRA1.060e-4473.47Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gadi... [more]
A0A6U6N6L8_9DINO2.430e-4472.16Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1U4W9_9STRA3.080e-4473.96Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9WIM1_9STRA9.320e-4470.83Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2FI45_9STRA9.420e-4475.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2JIP4_9DINO1.610e-4373.20Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
A0A7S3GY78_9STRA3.370e-4370.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11134contigH-elongata_contig11134:8473..8766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue7.7e-35
Seed eggNOG ortholog159749.K0T0F0
EggNOG free text desc.GTP cyclohydrolase N terminal
EggNOG OGs2XAA3@2836,COG0807@1,KOG1284@2759
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.5258088-CDS-H-elongata_contig11134:8472..87661622929637.5258088-CDS-H-elongata_contig11134:8472..8766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11134 8473..8766 +
1691679100.8227217-CDS-H-elongata_contig11134:8472..87661691679100.8227217-CDS-H-elongata_contig11134:8472..8766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11134 8473..8766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11134.930.1prot_H-elongata_contig11134.930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11134 8473..8766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11134.930.1

>prot_H-elongata_contig11134.930.1 ID=prot_H-elongata_contig11134.930.1|Name=mRNA_H-elongata_contig11134.930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QDGQSFITKCAVEPVWYLPEIAWRFGVDEVKLRETLFKETNMMYPELVTR
EDLKAFLPPIGGLTIYMFGDPALIPDEDVPLTVRVYDECNGSDVFGSN
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mRNA from alignment at H-elongata_contig11134:8473..8766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11134.930.1 ID=mRNA_H-elongata_contig11134.930.1|Name=mRNA_H-elongata_contig11134.930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig11134:8473..8766+ (Himanthalia elongata Himel1 dioecious)
CAGGACGGACAATCTTTCATCACCAAGTGCGCCGTGGAGCCGGTGTGGTA CCTTCCCGAGATCGCGTGGCGGTTTGGAGTGGACGAGGTCAAGCTCCGAG AAACCTTGTTCAAGGAGACCAACATGATGTACCCGGAGCTTGTCACCAGG GAAGACCTTAAGGCGTTTCTTCCTCCGATCGGCGGGCTGACGATTTACAT GTTCGGAGATCCCGCCTTGATTCCCGATGAGGACGTGCCCTTGACGGTCC GCGTATACGACGAGTGTAACGGCTCTGACGTATTTGGAAGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig11134:8473..8766+

>mRNA_H-elongata_contig11134.930.1 ID=mRNA_H-elongata_contig11134.930.1|Name=mRNA_H-elongata_contig11134.930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig11134:8473..8766+ (Himanthalia elongata Himel1 dioecious)
CAGGACGGACAATCTTTCATCACCAAGTGCGCCGTGGAGCCGGTGTGGTA
CCTTCCCGAGATCGCGTGGCGGTTTGGAGTGGACGAGGTCAAGCTCCGAG
AAACCTTGTTCAAGGAGACCAACATGATGTACCCGGAGCTTGTCACCAGG
GAAGACCTTAAGGCGTTTCTTCCTCCGATCGGCGGGCTGACGATTTACAT
GTTCGGAGATCCCGCCTTGATTCCCGATGAGGACGTGCCCTTGACGGTCC
GCGTATACGACGAGTGTAACGGCTCTGACGTATTTGGAAGCAACCAGGAC
GGACAATCTTTCATCACCAAGTGCGCCGTGGAGCCGGTGTGGTACCTTCC
CGAGATCGCGTGGCGGTTTGGAGTGGACGAGGTCAAGCTCCGAGAAACCT
TGTTCAAGGAGACCAACATGATGTACCCGGAGCTTGTCACCAGGGAAGAC
CTTAAGGCGTTTCTTCCTCCGATCGGCGGGCTGACGATTTACATGTTCGG
AGATCCCGCCTTGATTCCCGATGAGGACGTGCCCTTGACGGTCCGCGTAT
ACGACGAGTGTAACGGCTCTGACGTATTTGGAAGCAAC
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