mRNA_H-elongata_contig111326.928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111326.928.1
Unique NamemRNA_H-elongata_contig111326.928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 6.200e-43
Identity = 72/146 (49.32%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V +A +WHRR+GH+H +SLDILRK  G G+ + G++S CDVCAVG ++Q  HPK  ++  +RPFQL   DLMGPF+P A+GG+ Y++K  D++ KW  V+L+  K+  + +LQLF  S + P   R+   RADKGGEYT   F +Y
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKY 408
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.790e-40
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V  A +WHRR+GH++ +SLD+LR++  +GI + GDV DC  C +GK+ Q  HPK   + V+ PFQL + D +GPFTP A+GG+KY  K  D++TKW  V L+  K  ++ +L+LF   TVIP   RI   RADKG E+T   +RQY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 715
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.830e-40
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V  A +WHRR+GH++ +SLD+LR++  +GI + GDV DC  C +GK+ Q  HPK   + V+ PFQL + D +GPFTP A+GG+KY  K  D++TKW  V L+  K  ++ +L+LF   TVIP   RI   RADKG E+T   +RQY
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 837
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.840e-40
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V  A +WHRR+GH++ +SLD+LR++  +GI + GDV DC  C +GK+ Q  HPK   + V+ PFQL + D +GPFTP A+GG+KY  K  D++TKW  V L+  K  ++ +L+LF   TVIP   RI   RADKG E+T   +RQY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 715
[Close]
BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.140e-39
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V +A +WHRR+GH++++SLDILRK    G+    DV DC  CA+GK+ Q  HPK   + V RPFQL + D +GPFTP A+GG+KY  K  D+ TKW  + L+  K  ++ SL LF   TV+P G  I   R D G E+T  EFRQY
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQY 668
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 3.190e-38
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            V +A +WHRR+GH++ +SLD+LRK    G+ + G+V+DC VC +GK+ Q  HPK   + V RPFQ    D +GPFTP A+GG+KY  K  D+ TKW  + L+  +  ++ SL LF   TV+P G RI   R D G E+T  EFRQY
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQY 428
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BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.870e-35
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K+   +++  +        G RI   R DKGGE TG EFR Y
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDY 187
[Close]
BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.730e-32
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K+   +++  +        G RI   R DKGGE TG EFR Y
Sbjct:  415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDY 563
[Close]
BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.700e-32
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K+   +++  +        G RI   R DKGGE TG EFR Y
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDY 187
[Close]
BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.820e-32
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 1 
Query:   10 VTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKAQQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVRKITDEYTKWTTVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY 447
            + +A  WHRRLGHL+A+SLDILRK  GTG+ +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K+   +++  +        G RI   R DKGGE TG EFR Y
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDY 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111326.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE6.200e-4349.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE1.790e-4047.95Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.830e-4047.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.840e-4047.95Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JBV6_9PHAE2.140e-3948.63Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE3.190e-3847.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE7.870e-3545.64Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KT84_9PHAE1.730e-3245.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE3.700e-3245.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE3.820e-3245.64Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111326contigH-elongata_contig111326:6..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.4
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.362729-CDS-H-elongata_contig111326:5..4521622929637.362729-CDS-H-elongata_contig111326:5..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111326 6..452 -
1691679100.7676055-CDS-H-elongata_contig111326:5..4521691679100.7676055-CDS-H-elongata_contig111326:5..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111326 6..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111326.928.1prot_H-elongata_contig111326.928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111326 6..452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111326.928.1

>prot_H-elongata_contig111326.928.1 ID=prot_H-elongata_contig111326.928.1|Name=mRNA_H-elongata_contig111326.928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MNAVTNAQVWHRRLGHLHAQSLDILRKRYGTGITFEGDVSDCDVCAVGKA
QQLAHPKTTNHKVNRPFQLCYGDLMGPFTPVAIGGYKYVRKITDEYTKWT
TVYLLTTKNQALQSLQLFVGSTVIPFGGRIVRWRADKGGEYTGEEFRQY
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mRNA from alignment at H-elongata_contig111326:6..452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111326.928.1 ID=mRNA_H-elongata_contig111326.928.1|Name=mRNA_H-elongata_contig111326.928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig111326:6..452- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCACCAATGCCCAGGTGTGGCACCGACGGTTGGGTCATCT
CCATGCGCAGAGCCTGGACATTCTACGCAAGCGATACGGCACTGGCATCA
CCTTCGAGGGGGACGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCT
CAACAGCTTGCTCATCCCAAGACGACCAATCATAAGGTCAACCGGCCTTT
CCAGCTGTGCTACGGAGACTTGATGGGGCCCTTCACGCCTGTGGCCATAG
GCGGCTACAAATACGTCAGAAAAATTACCGACGAGTACACAAAGTGGACC
ACCGTCTACTTGTTGACTACTAAGAACCAAGCTCTTCAGTCACTTCAACT
GTTCGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCATCGTTCGTTGGC
GCGCCGACAAGGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig111326:6..452-

>mRNA_H-elongata_contig111326.928.1 ID=mRNA_H-elongata_contig111326.928.1|Name=mRNA_H-elongata_contig111326.928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig111326:6..452- (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCACCAATGCCCAGGTGTGGCACCGACGGTTGGGTCATCT
CCATGCGCAGAGCCTGGACATTCTACGCAAGCGATACGGCACTGGCATCA
CCTTCGAGGGGGACGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCT
CAACAGCTTGCTCATCCCAAGACGACCAATCATAAGGTCAACCGGCCTTT
CCAGCTGTGCTACGGAGACTTGATGGGGCCCTTCACGCCTGTGGCCATAG
GCGGCTACAAATACGTCAGAAAAATTACCGACGAGTACACAAAGTGGACC
ACCGTCTACTTGTTGACTACTAAGAACCAAGCTCTTCAGTCACTTCAACT
GTTCGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCATCGTTCGTTGGC
GCGCCGACAAGGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACATG
AACGCAGTCACCAATGCCCAGGTGTGGCACCGACGGTTGGGTCATCTCCA
TGCGCAGAGCCTGGACATTCTACGCAAGCGATACGGCACTGGCATCACCT
TCGAGGGGGACGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCTCAA
CAGCTTGCTCATCCCAAGACGACCAATCATAAGGTCAACCGGCCTTTCCA
GCTGTGCTACGGAGACTTGATGGGGCCCTTCACGCCTGTGGCCATAGGCG
GCTACAAATACGTCAGAAAAATTACCGACGAGTACACAAAGTGGACCACC
GTCTACTTGTTGACTACTAAGAACCAAGCTCTTCAGTCACTTCAACTGTT
CGTCGGCTCGACAGTCATTCCCTTCGGCGGCCGCATCGTTCGTTGGCGCG
CCGACAAGGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTAC
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