mRNA_H-elongata_contig111257.923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111257.923.1
Unique NamemRNA_H-elongata_contig111257.923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.020e-63
Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 3 
Query:  321 PYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSYHD 770
            PY      R      NN A PPDL L++KG H G+HY+MSLLTGY E   GKD+L GL ++PYF GTSI MPPPLM+GQ+EYPDGTPATVSQMSKDV  FL    EP++DERKRMGMKWCSAM L LALS+YYKRFRWS LKTRK +YHD
Sbjct:  135 PYKNEASARAA----NNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHD 280
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.550e-44
Identity = 79/161 (49.07%), Postives = 105/161 (65.22%), Query Frame = 3 
Query:  282 QGRDVRAPRQTVRPYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            +G     P +   P P+   +       NN A PPDL LI+K  H G  Y+ +L+TGYI+   GKDV  GL ++PYF G +I MP PL +G++EY DGTPATVSQM+KDV++FL  + EP+ DERK+MGM+WC  + +   L+ YYKR RW+ LKTRK  Y
Sbjct:  111 EGEMFERPGKLSDPLPKPYANDEAASAANNGAIPPDLSLIVKARHAGADYLFALMTGYIDAPEGKDVGAGLHYNPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEY 271
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A7S0LNA9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LNA9_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 8.100e-44
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3 
Query:  321 PYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            PY    Q R      NN A PPDL L++K  H G  Y+++LLTGY+E   GK +L GL ++PYF G +I MP PLM+GQ+EY DGTP T +QM+KDVA+FL  + EP+ D+RKR G+++  A+A ALA++ +YKRFRWS  KTRK SY
Sbjct:   65 PYANEEQARAA----NNGAYPPDLSLMVKSRHDGIDYLVALLTGYMEAPAGKTMLSGLYYNPYFPGGAIAMPKPLMDGQVEYEDGTPGTETQMAKDVAVFLAWAAEPEHDDRKRGGLQFLMAVAFALAITGFYKRFRWSIYKTRKISY 208
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A8J2WYD8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYD8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 7.920e-43
Identity = 77/133 (57.89%), Postives = 97/133 (72.93%), Query Frame = 3 
Query:  366 NN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            NN A PPDL LI+K  H G  YI SLL+GY E   GK +L GL ++PYF+G +I MP PLM+ Q+EYPDGTPATVSQM+KDVA+FL    EP+ DERK+ G +W +A+ LA  ++ Y KRFRW+ LK RK +Y
Sbjct:  139 NNGALPPDLSLIVKARHGGADYIFSLLSGYCEAPAGKAMLPGLYYNPYFAGGAIGMPAPLMDEQVEYPDGTPATVSQMAKDVAVFLAWVAEPEHDERKKGGFRWITALGLAALVAGYTKRFRWANLKARKITY 271
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.160e-42
Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 3 
Query:  321 PYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            PY    + R      N  A PPDL L+ K  H G  Y+ +LLTGY ++  GKD+L GL ++PYF+G +I MPPPLM+GQ+EY DGTPATV+QM+KDV+ FL    EP+ DERK+ G+K  + +AL + ++ YYKR RW+ +KTRK +Y
Sbjct:  127 PYRNEAEGRAA----NGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 270
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A067C0J4_SAPPC (Cytochrome c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C0J4_SAPPC)

HSP 1 Score: 154 bits (389), Expect = 3.050e-42
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 3 
Query:  321 PYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            P+P+   +       NN A PPDL L++K  H G  YI SL+TGY+    G +V  GL ++PYFSG  I M  PL +GQ+EY DGTPATVSQM+KDVA FL  + EP+ DERK+MGM+WC  + +    + YYKR RW+ LKTRK +Y
Sbjct:  123 PFPKPYANDEAAAAANNGAVPPDLSLMVKARHAGADYIFSLMTGYVPAPEGNEVGAGLHYNPYFSGGMIAMAQPLNDGQVEYEDGTPATVSQMAKDVACFLSWAAEPEHDERKKMGMQWCFGLFVTALFTGYYKRMRWAPLKTRKITY 270
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A7S2BRP9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BRP9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.390e-42
Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = 3 
Query:  282 QGRDVRAPRQTVRPYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            +G     P +   P P    +       N  A PPDL L++K  H G  YI +LLTGY++   GK++L GL ++PYF+G +I MPPPLM+GQ+E+ D TPATVSQM+KDV++FL  + EP+ D+RK+ GMKW  A+ +    S +YKRFR++ LKTR+ SY
Sbjct:  113 EGEMFERPGKLTDPLPSPYANDQAGRAANGGALPPDLSLMVKSRHAGVDYIFALLTGYVDPPEGKEMLSGLHYNPYFAGAAIAMPPPLMDGQVEFLDKTPATVSQMAKDVSVFLAWASEPEHDDRKKAGMKWIFALGICAVASGFYKRFRFASLKTRQISY 273
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: F0Y5T3_AURAN (Cytochrome c domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5T3_AURAN)

HSP 1 Score: 152 bits (385), Expect = 1.030e-41
Identity = 79/161 (49.07%), Postives = 105/161 (65.22%), Query Frame = 3 
Query:  282 QGRDVRAPRQTVRPYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            +G     P +   P P    +       NN A PPDL LI+K  H G  YI SLL+GY +   GK +L GL ++PYF+G +I MP PLM+ Q+E+PDGTPATVSQM+KDVA+FL  + EP+ D+RK+ G +W  A++LA  ++ + KRFRWS LK RK SY
Sbjct:  104 EGEMFERPGKLSDPMPGPYANEEAARAANNGALPPDLSLIVKARHGGADYIFSLLSGYCDAPEGKVMLPGLYYNPYFAGGAIGMPAPLMDEQVEFPDGTPATVSQMAKDVAVFLSWAAEPEHDDRKKAGFRWLVALSLAAVVAGWTKRFRWSILKARKISY 264
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: W4G561_9STRA (Cytochrome c domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G561_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.240e-41
Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = 3 
Query:  282 QGRDVRAPRQTVRPYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            QG     P +   P P+   +       NN A PPDL LI+K  H G  Y+ +LLTGY+E   GK++  GL ++PYF G +I M   L +G++ Y DGTPAT SQM+KDV++FL  + EP+ DERK+MG++WC  +  A  L+ YYKR RW+ LKTRK SY
Sbjct:  111 QGESFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARHAGADYLFALLTGYVEAPEGKELGNGLYYNPYFGGGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSVFLAWAAEPEHDERKKMGLQWCLGLFAAAVLTGYYKRLRWAPLKTRKISY 271
[Close]
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.070e-40
Identity = 79/148 (53.38%), Postives = 97/148 (65.54%), Query Frame = 3 
Query:  321 PYPQSVQDRGCRPWTNN*ACPPDLCLIMKGNHKGYHYIMSLLTGYIETLFGKDVLRGL*FSPYFSGTSIFMPPPLMNGQMEYPDGTPATVSQMSKDVAIFLFLSVEPKLDERKRMGMKWCSAMALALALSIYYKRFRWSRLKTRKNSY 764
            P P + ++ G     N  A PPDL L++K  H G  Y+ SLL GY E   GKD+L GL ++PYF G  I MPPPL +GQ++Y DGTPATVSQM+KDV IFL    EP+ DERK+ G K    +A AL  + +YKRFRWS  KTRK SY
Sbjct:  130 PSPYANEEAGRA--ANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDGGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLSY 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111257.923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX8_ECTSI1.020e-6368.00Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A485LA40_9STRA2.550e-4449.07Aste57867_18449 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0LNA9_9EUKA8.100e-4453.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J2WYD8_9STRA7.920e-4357.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z587_9STRA2.160e-4250.68Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
A0A067C0J4_SAPPC3.050e-4251.35Cytochrome c domain-containing protein n=4 Tax=Sap... [more]
A0A7S2BRP9_9STRA6.390e-4247.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y5T3_AURAN1.030e-4149.07Cytochrome c domain-containing protein n=1 Tax=Aur... [more]
W4G561_9STRA1.240e-4147.20Cytochrome c domain-containing protein n=2 Tax=Aph... [more]
A0A7S1BBA1_9STRA1.070e-4053.38Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111257contigH-elongata_contig111257:1383..2155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D7FVX8
Preferred nameCYC1
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
EggNOG free text desc.Cytochrome c1
EggNOG OGsCOG2857@1,KOG3052@2759
COG Functional cat.C
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111257.923.1prot_H-elongata_contig111257.923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111257 1757..1987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.7780354-UTR-H-elongata_contig111257:1382..17561622929636.7780354-UTR-H-elongata_contig111257:1382..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111257 1383..1756 -
1691679100.5863378-UTR-H-elongata_contig111257:1382..17561691679100.5863378-UTR-H-elongata_contig111257:1382..1756Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111257 1383..1756 -
1622929636.811365-UTR-H-elongata_contig111257:1987..21551622929636.811365-UTR-H-elongata_contig111257:1987..2155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111257 1988..2155 -
1691679100.604327-UTR-H-elongata_contig111257:1987..21551691679100.604327-UTR-H-elongata_contig111257:1987..2155Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111257 1988..2155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.7950387-CDS-H-elongata_contig111257:1756..19871622929636.7950387-CDS-H-elongata_contig111257:1756..1987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111257 1757..1987 -
1691679100.5966914-CDS-H-elongata_contig111257:1756..19871691679100.5966914-CDS-H-elongata_contig111257:1756..1987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111257 1757..1987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111257.923.1

>prot_H-elongata_contig111257.923.1 ID=prot_H-elongata_contig111257.923.1|Name=mRNA_H-elongata_contig111257.923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MCHSIKFIAFRNLIGVSNSEAKVKKIAAEYEVEDGPNGKGEMFERPAKPS
DLIPNLYKIEAAARGRTTEPARPTCV*
back to top

mRNA from alignment at H-elongata_contig111257:1383..2155-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111257.923.1 ID=mRNA_H-elongata_contig111257.923.1|Name=mRNA_H-elongata_contig111257.923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=773bp|location=Sequence derived from alignment at H-elongata_contig111257:1383..2155- (Himanthalia elongata Himel1 dioecious)
ATGGCCCGTGCGGCGGCGGCAAAGGTGGGCGCGGTAGCGGCTGGTGGTGT
GGTTGTGTTCTGCGATTATGTGGTTCATACCGGTTGAGGGCCTCATTCGG
GATTCCTTTCCTCGTTCCACCACGCGACCATCCACCGAGGATGGCAGGTG
TACCGAGAGGTGTGCTCAATGTGTCACTCCATCAAGTTCATCGCCTTCCG
TAACCTAATCGGCGTTTCCAACTCTGAGGCTAAGGTCAAGAAGATCGCGG
CTGAGTACGAGGTGGAGGACGGGCCGAACGGCAAGGGCGAGATGTTCGAG
CGCCCCGCCAAACCGTCCGACCTTATCCCCAATCTGTACAAGATCGAGGC
TGCCGCCCGTGGACGAACAACTGAGCCTGCCCGCCCGACCTGTGTCTGAT
CATGAAGGGGAACCACAAGGGTTACCACTACATCATGTCGCTCCTTACGG
GCTATATTGAAACCCTCTTTGGAAAGGATGTTCTCCGCGGGCTGTAATTT
AGTCCGTACTTCTCCGGCACATCGATCTTCATGCCGCCCCCTCTCATGAA
CGGTCAGATGGAGTACCCTGATGGAACTCCCGCCACCGTCTCCCAGATGT
CGAAGGACGTGGCGATCTTCCTTTTCTTGAGCGTCGAGCCCAAGCTGGAC
GAGCGCAAGCGCATGGGTATGAAGTGGTGCTCCGCGATGGCCCTAGCCCT
CGCTCTGTCTATTTACTACAAGCGCTTCCGGTGGTCGCGGCTCAAAACCC
GTAAGAATAGCTACCACGACTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig111257:1383..2155-

>mRNA_H-elongata_contig111257.923.1 ID=mRNA_H-elongata_contig111257.923.1|Name=mRNA_H-elongata_contig111257.923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig111257:1383..2155- (Himanthalia elongata Himel1 dioecious)
ATGTGTCACTCCATCAAGTTCATCGCCTTCCGTAACCTAATCGGCGTTTC
CAACTCTGAGGCTAAGGTCAAGAAGATCGCGGCTGAGTACGAGGTGGAGG
ACGGGCCGAACGGCAAGGGCGAGATGTTCGAGCGCCCCGCCAAACCGTCC
GACCTTATCCCCAATCTGTACAAGATCGAGGCTGCCGCCCGTGGACGAAC
AACTGAGCCTGCCCGCCCGACCTGTGTCTGAATGTGTCACTCCATCAAGT
TCATCGCCTTCCGTAACCTAATCGGCGTTTCCAACTCTGAGGCTAAGGTC
AAGAAGATCGCGGCTGAGTACGAGGTGGAGGACGGGCCGAACGGCAAGGG
CGAGATGTTCGAGCGCCCCGCCAAACCGTCCGACCTTATCCCCAATCTGT
ACAAGATCGAGGCTGCCGCCCGTGGACGAACAACTGAGCCTGCCCGCCCG
ACCTGTGTCTGA
back to top