mRNA_H-elongata_contig111247.921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111247.921.1
Unique NamemRNA_H-elongata_contig111247.921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111247.921.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.440e-8
Identity = 24/37 (64.86%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   10 LADSIAAAVIERFQSLKARGKPQDREWTVLAGLVAED 120
            L D +A+AV+E+F +LK+RGKPQ +EWTVLAG+VA+D
Sbjct:    3 LGDRVASAVVEQFDNLKSRGKPQGKEWTVLAGIVAQD 39
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BLAST of mRNA_H-elongata_contig111247.921.1 vs. uniprot
Match: A0A8J2A0D3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2A0D3_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 ADSIAAAVIERFQSLKARGKPQDREWTVLAGLVAEDITVS 132
            AD +A  VIE+F+SLK  GKPQ +EWTVLAG+V    T S
Sbjct:   26 ADRVATCVIEKFESLKKHGKPQGKEWTVLAGVVLRTKTSS 65
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BLAST of mRNA_H-elongata_contig111247.921.1 vs. uniprot
Match: A0A6J0BJ53_NEOLC (tRNA-specific adenosine deaminase 1 n=5 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BJ53_NEOLC)

HSP 1 Score: 48.5 bits (114), Expect = 3.270e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 MTSLADSIAAAVIERFQSLKARGKPQDREWTVLAGLVAEDITVSI 135
            M +LAD IA    E++ S    GKPQD EWTVLAG+V +D   S+
Sbjct:    1 MNNLADRIAQLCCEKYNSFGKTGKPQDTEWTVLAGIVLKDAQESL 45
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BLAST of mRNA_H-elongata_contig111247.921.1 vs. uniprot
Match: UPI000771C583 (tRNA-specific adenosine deaminase 1 isoform X1 n=2 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771C583)

HSP 1 Score: 47.8 bits (112), Expect = 6.130e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 MTSLADSIAAAVIERFQSLKARGKPQDREWTVLAGLVAEDI--TVSIM 138
            M S AD +A   ++++ SLK  GKP   EWTVL+G+V E+I  T+S++
Sbjct:    1 MNSFADKVAKLCLQKYNSLKKTGKPTSNEWTVLSGIVLENINGTLSVV 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111247.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LI40_ECTSI2.440e-864.86A to I editase domain-containing protein n=2 Tax=E... [more]
A0A8J2A0D3_9DINO1.690e-660.00Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A6J0BJ53_NEOLC3.270e-551.11tRNA-specific adenosine deaminase 1 n=5 Tax=Diprio... [more]
UPI000771C5836.130e-545.83tRNA-specific adenosine deaminase 1 isoform X1 n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111247contigH-elongata_contig111247:1849..1992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.6715763-CDS-H-elongata_contig111247:1848..19921622929636.6715763-CDS-H-elongata_contig111247:1848..1992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111247 1849..1992 -
1691679100.563887-CDS-H-elongata_contig111247:1848..19921691679100.563887-CDS-H-elongata_contig111247:1848..1992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111247 1849..1992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111247.921.1prot_H-elongata_contig111247.921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111247 1849..1992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111247.921.1

>prot_H-elongata_contig111247.921.1 ID=prot_H-elongata_contig111247.921.1|Name=mRNA_H-elongata_contig111247.921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MTSLADSIAAAVIERFQSLKARGKPQDREWTVLAGLVAEDITVSIMLS
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mRNA from alignment at H-elongata_contig111247:1849..1992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111247.921.1 ID=mRNA_H-elongata_contig111247.921.1|Name=mRNA_H-elongata_contig111247.921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig111247:1849..1992- (Himanthalia elongata Himel1 dioecious)
ATGACGTCGCTCGCTGATTCCATAGCAGCAGCTGTGATAGAACGTTTCCA
GAGTCTTAAGGCAAGGGGGAAGCCACAGGATCGTGAATGGACTGTGCTTG
CGGGCCTTGTCGCCGAGGACATTACGGTGAGTATCATGCTCTCA
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Coding sequence (CDS) from alignment at H-elongata_contig111247:1849..1992-

>mRNA_H-elongata_contig111247.921.1 ID=mRNA_H-elongata_contig111247.921.1|Name=mRNA_H-elongata_contig111247.921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig111247:1849..1992- (Himanthalia elongata Himel1 dioecious)
ATGACGTCGCTCGCTGATTCCATAGCAGCAGCTGTGATAGAACGTTTCCA
GAGTCTTAAGGCAAGGGGGAAGCCACAGGATCGTGAATGGACTGTGCTTG
CGGGCCTTGTCGCCGAGGACATTACGGTGAGTATCATGCTCTCAATGACG
TCGCTCGCTGATTCCATAGCAGCAGCTGTGATAGAACGTTTCCAGAGTCT
TAAGGCAAGGGGGAAGCCACAGGATCGTGAATGGACTGTGCTTGCGGGCC
TTGTCGCCGAGGACATTACGGTGAGTATCATGCTCTCA
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