mRNA_H-elongata_contig111174.916.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 4.180e-23 Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKKNE 183
SDLPP+WVP+AV VL +GIGLLQGSLGDVMNDEAKLG +SGARA KQSARDR MFKKK++
Sbjct: 109 SDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQ 169
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.190e-16 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
+LPP+WVP+ + V++ GIG Q SLG+VM+DEAKLGG+SGARA KQSAR RSMFK+K
Sbjct: 48 DELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.310e-12 Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
++LPP+WVP+ V++ G+GLL SLGDVMN+EA LG MSGA+A K+ R RS + KK
Sbjct: 78 AELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A6U1XMR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XMR7_TRICV) HSP 1 Score: 65.9 bits (159), Expect = 5.500e-12 Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
++LPP+WVP+ ++ G+GLL GSLGDVM+DEA LG MSGA+A K+ R RS + KK
Sbjct: 95 AELPPVWVPIVFAIAILGGVGLLTGSLGDVMSDEASLGLMSGAQAKKEMERSRSSYFKK 153
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.380e-11 Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
++LPP+WVP VL+VG+GLL GSLG+V+++E+ LG SGARA K+ R RS + KK
Sbjct: 65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK) HSP 1 Score: 60.5 bits (145), Expect = 3.950e-9 Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSAR 153
+LPP+WVP+A VL VGIG+LQ SLGDVM EA LG SGARA K++ R
Sbjct: 462 EELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.320e-9 Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 7 LPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMF 168
LPP WVPV V L+ G+GLLQ SLG+V +DEA LG SGARA K+S R++
Sbjct: 89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A1Z5K2E8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2E8_FISSO) HSP 1 Score: 55.8 bits (133), Expect = 1.670e-8 Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
++LPP +VPV V L+VG+G+L SLG+VM++EA LG SGARA K+ R RS + KK
Sbjct: 49 AELPPPYVPVLVGLGLLVGVGVLTSSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 107
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.630e-8 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
++LPP +VP L+VG+GLL GSLG+VM++EA LG SGARA K+ R RS + KK
Sbjct: 90 AELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S2XRK3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRK3_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.150e-8 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
+LPP + V ++ G+GLL GSLGDVM +EA+LG MSGARA K+ R RS + KK
Sbjct: 110 EELPPPYFAVVFAIAILGGVGLLTGSLGDVMTEEAQLGMMSGARAKKEKERSRSSYFKK 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111174.916.1 >prot_H-elongata_contig111174.916.1 ID=prot_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSAback to top mRNA from alignment at H-elongata_contig111174:275..466- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111174.916.1 ID=mRNA_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig111174:275..466- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111174:275..466- >mRNA_H-elongata_contig111174.916.1 ID=mRNA_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig111174:275..466- (Himanthalia elongata Himel1 dioecious)back to top |