mRNA_H-elongata_contig111155.915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111155.915.1
Unique NamemRNA_H-elongata_contig111155.915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111155.915.1 vs. uniprot
Match: D8LTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.020e-10
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 GGPRALLQTRNPECTMPEEDPCVINTTAIGMVESGYATYYD 123
            GG R+L +  +P C++PEEDPC +NTTAIGMVE G +TYYD
Sbjct:   97 GGVRSLQEATDPLCSLPEEDPCTLNTTAIGMVEWGTSTYYD 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111155.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTK8_ECTSI4.020e-1063.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111155contigH-elongata_contig111155:203..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003710.1
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.3238308-CDS-H-elongata_contig111155:202..3311622929636.3238308-CDS-H-elongata_contig111155:202..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111155 203..331 -
1691679100.5078123-CDS-H-elongata_contig111155:202..3311691679100.5078123-CDS-H-elongata_contig111155:202..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111155 203..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111155.915.1prot_H-elongata_contig111155.915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111155 203..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111155.915.1

>prot_H-elongata_contig111155.915.1 ID=prot_H-elongata_contig111155.915.1|Name=mRNA_H-elongata_contig111155.915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
GGPRALLQTRNPECTMPEEDPCVINTTAIGMVESGYATYYDE*
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mRNA from alignment at H-elongata_contig111155:203..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111155.915.1 ID=mRNA_H-elongata_contig111155.915.1|Name=mRNA_H-elongata_contig111155.915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig111155:203..331- (Himanthalia elongata Himel1 dioecious)
GGCGGCCCGCGGGCGCTGCTCCAAACACGGAATCCGGAGTGTACGATGCC
CGAAGAGGACCCGTGCGTTATCAACACTACTGCCATCGGGATGGTGGAAT
CTGGATATGCGACCTACTACGATGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig111155:203..331-

>mRNA_H-elongata_contig111155.915.1 ID=mRNA_H-elongata_contig111155.915.1|Name=mRNA_H-elongata_contig111155.915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig111155:203..331- (Himanthalia elongata Himel1 dioecious)
GGCGGCCCGCGGGCGCTGCTCCAAACACGGAATCCGGAGTGTACGATGCC
CGAAGAGGACCCGTGCGTTATCAACACTACTGCCATCGGGATGGTGGAAT
CTGGATATGCGACCTACTACGATGAGTAAGGCGGCCCGCGGGCGCTGCTC
CAAACACGGAATCCGGAGTGTACGATGCCCGAAGAGGACCCGTGCGTTAT
CAACACTACTGCCATCGGGATGGTGGAATCTGGATATGCGACCTACTACG
ATGAGTAA
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