mRNA_H-elongata_contig111151.913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111151.913.1
Unique NamemRNA_H-elongata_contig111151.913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: D7FYW6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW6_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.100e-25
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   13 NARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            +A    I+L  WLP T +QLP NASHQVGVGALVLNE GD+LVVRE+NGPLRGTGIWKFPTG
Sbjct:   70 HAEKAYIMLNMWLPSTASQLPANASHQVGVGALVLNEDGDVLVVRERNGPLRGTGIWKFPTG 131
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A2P6TQS8_CHLSO (Nudix hydrolase 8 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TQS8_CHLSO)

HSP 1 Score: 94.0 bits (232), Expect = 6.100e-21
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 FRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            F +A    ++L RWLP+T N+LP NASHQVGVGA VLNE  ++LVV+E+NGPLRG G+WK PTG
Sbjct:   79 FHHAETDYLMLTRWLPDTENKLPPNASHQVGVGAFVLNEQREVLVVQERNGPLRGKGVWKMPTG 142
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A5N6MC26_9ASTR (Nudix hydrolase domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MC26_9ASTR)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-20
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    4 FFRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            ++ +A    ++L  W+PET+N LP NASH+VGVGA V+NE G++LVV+EK+G  +GTGIWKFPTG
Sbjct:   90 YYHHAEPKHLMLVHWIPETINTLPANASHRVGVGAFVMNENGEVLVVQEKSGKFQGTGIWKFPTG 154
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: UPI001CB938E2 (nudix hydrolase 2-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB938E2)

HSP 1 Score: 90.5 bits (223), Expect = 3.880e-20
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 FRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            + +A    ++L RW+PETVN LP NASH+VG+GA V NE G++LVV+EK+G  +GTG+WKFPTG
Sbjct:  140 YHHAEPNHLMLVRWIPETVNTLPANASHRVGIGAFVTNEKGEVLVVQEKSGKFQGTGVWKFPTG 203
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A6S7LGL3_LACSI (Nudix hydrolase domain-containing protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7LGL3_LACSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.870e-20
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 FFRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            ++ +A    ++L  W+PET N LP NASH+VG+GA V+N+ G +LVV+EK+G  RGTGIWKFPTG
Sbjct:  103 YYHHAEPKHLMLVHWIPETTNTLPANASHRVGIGAFVMNQNGQVLVVKEKSGKFRGTGIWKFPTG 167
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A5N6LJ18_9ASTR (Nudix hydrolase domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LJ18_9ASTR)

HSP 1 Score: 90.5 bits (223), Expect = 7.130e-20
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    4 FFRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            ++ +A    ++L  W+PET+N LP NASH+VGVGA V+NE G++LVV+EK+G  +GTGIWKFPTG
Sbjct:   90 YYHHAEPKHLMLVHWIPETINTLPANASHRVGVGAFVMNEHGEVLVVQEKSGKFQGTGIWKFPTG 154
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BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A118K0C3_CYNCS (Nudix hydrolase 6-like protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K0C3_CYNCS)

HSP 1 Score: 89.7 bits (221), Expect = 7.440e-20
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 FFRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            ++ +A    ++L  W+PET N LP NASH+VG+GA V+NE G++LVV+EK+G  +GTGIWKFPTG
Sbjct:  138 YYHHAEPRHLMLVHWIPETTNTLPANASHRVGIGAFVMNENGEVLVVQEKSGKFQGTGIWKFPTG 202
[Close]
BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A834YM92_9MAGN (Nudix hydrolase domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YM92_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 1.170e-19
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 FRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            + +A  I ++L  W+PETV+ LP NASH+VG+GA V+NE  ++LVV+EK+G  RGTG+WKFPTG
Sbjct:  144 YHHAEPIYLMLVYWIPETVDTLPSNASHRVGIGAFVMNEKREVLVVQEKSGKFRGTGVWKFPTG 207
[Close]
BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: A0A5B6ZP79_DAVIN (Putative nudix hydrolase 10-like (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZP79_DAVIN)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-19
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    7 FRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            + +A    ++L  W+P+T N LP NASH+VG+GA V+N+ G++LVV+E NG  +GTG+WKFPTG
Sbjct:   17 YHHAEPTYLMLVNWIPKTTNTLPANASHRVGIGAFVMNDKGEVLVVQENNGRFKGTGVWKFPTG 80
[Close]
BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Match: E1Z7H0_CHLVA (Nudix hydrolase domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z7H0_CHLVA)

HSP 1 Score: 87.4 bits (215), Expect = 1.440e-19
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    7 FRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVREKNGPLRGTGIWKFPTG 198
            F +A    ++L RWLP + N+LP NASHQVG+GA V+NE  ++LVV+E++GPLRG G+WK PTG
Sbjct:   70 FHHAEKEYVMLTRWLPSSENKLPPNASHQVGMGAFVMNERREVLVVQERSGPLRGQGVWKMPTG 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111151.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYW6_ECTSI6.100e-2575.81Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A2P6TQS8_CHLSO6.100e-2164.06Nudix hydrolase 8 n=1 Tax=Chlorella sorokiniana Ta... [more]
A0A5N6MC26_9ASTR1.030e-2058.46Nudix hydrolase domain-containing protein n=1 Tax=... [more]
UPI001CB938E23.880e-2059.38nudix hydrolase 2-like n=1 Tax=Erigeron canadensis... [more]
A0A6S7LGL3_LACSI4.870e-2056.92Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A5N6LJ18_9ASTR7.130e-2058.46Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A118K0C3_CYNCS7.440e-2056.92Nudix hydrolase 6-like protein n=1 Tax=Cynara card... [more]
A0A834YM92_9MAGN1.170e-1957.81Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A5B6ZP79_DAVIN1.260e-1953.13Putative nudix hydrolase 10-like (Fragment) n=1 Ta... [more]
E1Z7H0_CHLVA1.440e-1957.81Nudix hydrolase domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111151contigH-elongata_contig111151:383..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog2880.D7FYW6
KEGG rclassRC00005
KEGG koko:K13648
KEGG ReactionR05191
KEGG Pathwayko00520,map00520
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004551,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0009605,GO:0009607,GO:0009611,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0023051,GO:0023056,GO:0035529,GO:0036094,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0047631,GO:0048037,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051287,GO:0051704,GO:0051707,GO:0065007,GO:0071944,GO:0080151,GO:0097159,GO:1901265,GO:1901363,GO:2000031,GO:2001023,GO:2001025,GO:2001038,GO:2001040
EggNOG free text desc.8-hydroxy-dADP phosphatase activity
EggNOG OGsKOG0648@1,KOG0648@2759
EC2.4.1.43
COG Functional cat.L
CAZyGT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.2062168-CDS-H-elongata_contig111151:382..4231622929636.2062168-CDS-H-elongata_contig111151:382..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111151 383..423 -
1691679100.471659-CDS-H-elongata_contig111151:382..4231691679100.471659-CDS-H-elongata_contig111151:382..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111151 383..423 -
1622929636.2246883-CDS-H-elongata_contig111151:904..10611622929636.2246883-CDS-H-elongata_contig111151:904..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111151 905..1061 -
1691679100.4838233-CDS-H-elongata_contig111151:904..10611691679100.4838233-CDS-H-elongata_contig111151:904..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111151 905..1061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111151.913.1prot_H-elongata_contig111151.913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111151 383..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111151.913.1

>prot_H-elongata_contig111151.913.1 ID=prot_H-elongata_contig111151.913.1|Name=mRNA_H-elongata_contig111151.913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MFFRNARIILIILYRWLPETVNQLPENASHQVGVGALVLNETGDILVVRE
KNGPLRGTGIWKFPTG
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mRNA from alignment at H-elongata_contig111151:383..1061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111151.913.1 ID=mRNA_H-elongata_contig111151.913.1|Name=mRNA_H-elongata_contig111151.913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at H-elongata_contig111151:383..1061- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTCCGTAACGCACGGATTATACTTATTATATTATACAGATGGCT
CCCTGAAACAGTAAACCAGTTGCCGGAAAACGCCAGCCACCAGGTCGGGG
TGGGCGCGCTTGTTCTAAACGAAACAGGGGATATACTCGTCGTGCGAGAA
AAGAACGGTAAGCTTTTTTCCCCCTTTTCCCACTCTACGCCCTCCCGATG
ACGCGTGATCATGGTCAATGGTATTGTCAGCTAGGGCTTCCAAAACATTT
AAAGTCCCTCTTCTAACATTTCAAAAACATAGATAAACACAAATAAACCA
CAGCAGTGCACCTGAGAGCGGCCAGGGCTACTGCTAGCGTGTAAATGTGC
ACTACGACGCTCATCCGGGACGTTCCTTTTCATCCCGTCTAACTCCCTCT
CTAAACGATTATTTCAAGTTGCTGTCCCTGTGCGTAGATCTTGACATGTG
ATGTTATGTAGCGAGAATGAGGAGGATAAGGTGTAGGACTGATAGGGAGG
ATATATTTGGTGCTACTGCTGCTAGTACTGTAATGACTCTCTTTTGGTAA
TGCTACTGCTGCTGCTAACGTTGTTCTCGCTGTCTGCGACTTGGATGCGA
TCAACACATGATTGCCGGGTGCTGGGTGCGGGCAACAGGACCGCTGCGGG
GTACTGGCATCTGGAAGTTTCCCACGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig111151:383..1061-

>mRNA_H-elongata_contig111151.913.1 ID=mRNA_H-elongata_contig111151.913.1|Name=mRNA_H-elongata_contig111151.913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig111151:383..1061- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTCCGTAACGCACGGATTATACTTATTATATTATACAGATGGCT
CCCTGAAACAGTAAACCAGTTGCCGGAAAACGCCAGCCACCAGGTCGGGG
TGGGCGCGCTTGTTCTAAACGAAACAGGGGATATACTCGTCGTGCGAGAA
AAGAACGATGTTTTTCCGTAACGCACGGATTATACTTATTATATTATACA
GATGGCTCCCTGAAACAGTAAACCAGTTGCCGGAAAACGCCAGCCACCAG
GTCGGGGTGGGCGCGCTTGTTCTAAACGAAACAGGGGATATACTCGTCGT
GCGAGAAAAGAACGGACCGCTGCGGGGTACTGGCATCTGGAAGTTTCCCA
CGGGTGACCGCTGCGGGGTACTGGCATCTGGAAGTTTCCCACGGGT
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