mRNA_H-elongata_contig111143.911.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111143.911.1
Unique NamemRNA_H-elongata_contig111143.911.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: D8LS91_ECTSI (Glycine amidinotransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS91_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 4.570e-66
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            ++NSHTEWDPLEEVIVGRVD AT+PEWHVSGKAVWP KHW MYK HAG SFPRE+V KA+EELDNFS+VLE+EGVTVRRPEVRP DFDRPV+TPDFES +QLYAAMPRDVLI +G+
Sbjct:    9 IVNSHTEWDPLEEVIVGRVDDATIPEWHVSGKAVWPAKHWGMYKEHAGESFPRELVMKASEELDNFSQVLEMEGVTVRRPEVRPGDFDRPVSTPDFESVSQLYAAMPRDVLITIGN 124
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A067CLA6_SAPPC (Glycine amidinotransferase, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLA6_SAPPC)

HSP 1 Score: 181 bits (460), Expect = 9.600e-54
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            V+NSH EWDPLEE+IVG+++G+T+PEWHV+GKAVWP ++WDMYKN AG+ FPRE+++ AA+ELD  + VLE EGV VRRPE  P DF +P  TPDF+SK+ LYAAMPRD+LIVVG+
Sbjct:   23 VVNSHNEWDPLEEIIVGKIEGSTIPEWHVAGKAVWPSRYWDMYKNKAGQPFPRELMEAAAKELDYLAHVLEGEGVVVRRPEFNPEDFSKPFETPDFKSKSGLYAAMPRDILIVVGN 138
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A485K2Z9_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2Z9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.640e-53
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            V+NSH EWDPLEEVIVGRVDGAT+PEWHVSGKAVWP ++WDMYK  AG+SFP ++V  AA+ELD  S VLE EGV VRRPE  P DF + V TPDF+S  QLYAAMPRDVLIVVG+
Sbjct:   46 VVNSHNEWDPLEEVIVGRVDGATIPEWHVSGKAVWPSRYWDMYKTQAGQSFPADLVAAAAKELDYLSEVLEGEGVRVRRPEFNPDDFKKAVETPDFKSVGQLYAAMPRDVLIVVGN 161
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A7S3MD50_9STRA (Glycine amidinotransferase, mitochondrial (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD50_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.300e-53
Identity = 79/116 (68.10%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            ++NSH E+D LEEVIVG+V+GAT+PEWHVSGKAVWPEK WDMYK  +G+SFP E++ KAA +LDNF+++LE EGVTVRRPEV   DF +P  TPDFE    LYAAMPRD+L+VVG+
Sbjct:   32 IVNSHNEFDLLEEVIVGKVEGATIPEWHVSGKAVWPEKWWDMYKTQSGQSFPPEMINKAAADLDNFAKILEAEGVTVRRPEVTKEDFSQPYVTPDFECTNGLYAAMPRDILMVVGN 147
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: H3G7S4_PHYRM (Glycine amidinotransferase, mitochondrial n=8 Tax=Phytophthora TaxID=4783 RepID=H3G7S4_PHYRM)

HSP 1 Score: 179 bits (455), Expect = 2.940e-53
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:   10 SHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            SH EWDPLEEVIVGRV+GAT+PEWHVSGKAVWP KHWDMYK  AG+ FP+E++  AA+ELD  + VLE EGV VRRPE  P DF++PV TPDF S++QLYAAMPRDVLIV G+
Sbjct:    1 SHNEWDPLEEVIVGRVEGATIPEWHVSGKAVWPSKHWDMYKTRAGQPFPQELLAGAAKELDYLAEVLEGEGVIVRRPEAGPTDFNQPVETPDFSSRSQLYAAMPRDVLIVFGN 113
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A662X5V6_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5V6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.330e-53
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            +INSH EWDPLEEVIVGRVDGAT+PEWHV+GKAVWP K+WDMYK  AG+ FP+++++ AA+ELD  + VLE EGV VRRPEV   DF++PV TPDF S++QLYAAMPRDVLIV G+
Sbjct:   34 IINSHNEWDPLEEVIVGRVDGATIPEWHVAGKAVWPGKYWDMYKTKAGQPFPKDLMEGAAKELDYLAEVLEGEGVIVRRPEVNEGDFNQPVETPDFTSRSQLYAAMPRDVLIVFGN 149
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A0P1ABH4_PLAHL (Glycine amidinotransferase, mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABH4_PLAHL)

HSP 1 Score: 179 bits (454), Expect = 8.710e-53
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            +INSH EWDPLEEVIVGR++GAT+PEWHVSGKAVWP+K+WDMYK  AG+SFP E+++ AA+ELD  + VLE EG+ VRRPE    DF+  V TPDF S++QLYAAMPRDVLIVVG+
Sbjct:   29 IINSHNEWDPLEEVIVGRIEGATIPEWHVSGKAVWPQKYWDMYKTKAGQSFPTELMKGAAKELDYLAEVLEGEGIIVRRPEASDNDFNMEVKTPDFTSRSQLYAAMPRDVLIVVGN 144
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: K3XBD5_GLOUD (Glycine amidinotransferase, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBD5_GLOUD)

HSP 1 Score: 178 bits (452), Expect = 1.650e-52
Identity = 79/116 (68.10%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            ++NSH EWDPLEEVIVGRV+GAT+PEWHVSGKAVWP K WDMYK  +G+ FP++++  AA+ELD  + VLE EG+TVRRPE R   F++PV TPDF+SK+QLYAAMPRD+LIV G+
Sbjct:   28 IVNSHNEWDPLEEVIVGRVEGATIPEWHVSGKAVWPSKWWDMYKTESGQPFPKKLMDAAAQELDYLAEVLEGEGITVRRPEARDDYFNKPVETPDFKSKSQLYAAMPRDILIVFGN 143
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: W2R0S0_PHYPN (Glycine amidinotransferase, mitochondrial n=19 Tax=Peronosporaceae TaxID=4777 RepID=W2R0S0_PHYPN)

HSP 1 Score: 177 bits (449), Expect = 4.530e-52
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            +INSH EWDPLEEVIVGRV+GAT+PEWHV+GKAVWP+KHWDMYK  AG+ FP+ +++ AA+ELD  + VLE EGV VRRPE     F++PV TPDF S++QLYAAMPRDVLIV G+
Sbjct:   26 IINSHNEWDPLEEVIVGRVEGATIPEWHVAGKAVWPDKHWDMYKTKAGKPFPKNLMEGAAKELDYLAEVLEGEGVIVRRPETDTNYFNQPVETPDFTSRSQLYAAMPRDVLIVFGN 141
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BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Match: A0A6A3THL3_9STRA (Glycine amidinotransferase, mitochondrial n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3THL3_9STRA)

HSP 1 Score: 182 bits (461), Expect = 7.300e-51
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    1 VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRSFPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKTQLYAAMPRDVLIVVGS 348
            +INSH EWDPLEEVIVGRV+GAT+PEWHVSGKAVWP KHWDMYK  AG  FP+E+++ AA+ELD  + VLE EGV VRRPE    DF++P+ TPDF S++QLYAAMPRDVLIV G+
Sbjct:   36 IINSHNEWDPLEEVIVGRVEGATIPEWHVSGKAVWPNKHWDMYKTKAGLPFPKELMEGAAKELDYLAEVLEGEGVIVRRPEAATNDFNQPIKTPDFSSRSQLYAAMPRDVLIVFGN 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111143.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS91_ECTSI4.570e-6682.76Glycine amidinotransferase, mitochondrial n=2 Tax=... [more]
A0A067CLA6_SAPPC9.600e-5467.24Glycine amidinotransferase, mitochondrial n=4 Tax=... [more]
A0A485K2Z9_9STRA1.640e-5373.28Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A7S3MD50_9STRA2.300e-5368.10Glycine amidinotransferase, mitochondrial (Fragmen... [more]
H3G7S4_PHYRM2.940e-5372.57Glycine amidinotransferase, mitochondrial n=8 Tax=... [more]
A0A662X5V6_9STRA3.330e-5370.69Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A0P1ABH4_PLAHL8.710e-5369.83Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
K3XBD5_GLOUD1.650e-5268.10Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
W2R0S0_PHYPN4.530e-5268.97Glycine amidinotransferase, mitochondrial n=19 Tax... [more]
A0A6A3THL3_9STRA7.300e-5170.69Glycine amidinotransferase, mitochondrial n=6 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111143contigH-elongata_contig111143:927..1569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue4.3e-53
Seed eggNOG ortholog2880.D8LS91
Preferred nameGATM
KEGG rclassRC00024,RC02749
KEGG koko:K00613
KEGG ReactionR00565,R01989
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
GOsGO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006082,GO:0006520,GO:0006575,GO:0006600,GO:0006601,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0007584,GO:0007610,GO:0007611,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009611,GO:0009719,GO:0009725,GO:0009790,GO:0009888,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0014889,GO:0015067,GO:0015068,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019752,GO:0019866,GO:0031090,GO:0031099,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043500,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046689,GO:0048513,GO:0048568,GO:0048589,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901698,GO:1901700,GO:1990402
EggNOG free text desc.glycine amidinotransferase activity
EggNOG OGs2QVCA@2759,COG1834@1
EC2.1.4.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.064706-CDS-H-elongata_contig111143:926..11011622929636.064706-CDS-H-elongata_contig111143:926..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111143 927..1101 +
1691679100.4324884-CDS-H-elongata_contig111143:926..11011691679100.4324884-CDS-H-elongata_contig111143:926..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111143 927..1101 +
1622929636.0798821-CDS-H-elongata_contig111143:1396..15691622929636.0798821-CDS-H-elongata_contig111143:1396..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111143 1397..1569 +
1691679100.443134-CDS-H-elongata_contig111143:1396..15691691679100.443134-CDS-H-elongata_contig111143:1396..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111143 1397..1569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111143.911.1prot_H-elongata_contig111143.911.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111143 927..1569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111143.911.1

>prot_H-elongata_contig111143.911.1 ID=prot_H-elongata_contig111143.911.1|Name=mRNA_H-elongata_contig111143.911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VINSHTEWDPLEEVIVGRVDGATVPEWHVSGKAVWPEKHWDMYKNHAGRS
FPREIVQKAAEELDNFSRVLELEGVTVRRPEVRPRDFDRPVTTPDFESKT
QLYAAMPRDVLIVVGS
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mRNA from alignment at H-elongata_contig111143:927..1569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111143.911.1 ID=mRNA_H-elongata_contig111143.911.1|Name=mRNA_H-elongata_contig111143.911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=643bp|location=Sequence derived from alignment at H-elongata_contig111143:927..1569+ (Himanthalia elongata Himel1 dioecious)
GTCATCAACTCGCACACAGAGTGGGACCCACTCGAGGAGGTGATCGTCGG
CCGTGTTGACGGTGCGACTGTTCCTGAATGGCATGTCTCTGGTAAGGCCG
TGTGGCCTGAGAAGCACTGGGACATGTACAAGAACCACGCTGGACGCTCG
TTCCCCCGAGAGATCGTGCAGAAAGGTACACACTCAGGCGAAATATTGTC
AGAATAAGAGGAGATTATCGCTACAGTAAAGAAGGCTCGCCGCATCATGA
GCCCCTGTGCATTCCTTCGGAGAAACAAGGTTGCTTGGTATTTTTTCAAC
ATACTACAGTCCGTAACCCAAACACTTTATTTATATGGTACACGCCTGCT
ACTAAGCAATACTACCCTGAAACAATTGCTGATTTGCACGACCCTTCATG
TCCATTCGATTCATGTCGTAAGATACACATGCATTTGCCCCTCACTTGCC
CCGGAATCGAAAATCGACAGCCGCGGAAGAGCTCGACAACTTCTCACGCG
TATTGGAATTGGAAGGGGTTACCGTGCGGAGGCCCGAAGTCCGACCGAGA
GATTTTGACCGTCCTGTTACTACCCCAGATTTCGAGTCAAAGACACAGCT
CTACGCAGCTATGCCTAGGGACGTCTTGATCGTGGTGGGTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig111143:927..1569+

>mRNA_H-elongata_contig111143.911.1 ID=mRNA_H-elongata_contig111143.911.1|Name=mRNA_H-elongata_contig111143.911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig111143:927..1569+ (Himanthalia elongata Himel1 dioecious)
GTCATCAACTCGCACACAGAGTGGGACCCACTCGAGGAGGTGATCGTCGG
CCGTGTTGACGGTGCGACTGTTCCTGAATGGCATGTCTCTGGTAAGGCCG
TGTGGCCTGAGAAGCACTGGGACATGTACAAGAACCACGCTGGACGCTCG
TTCCCCCGAGAGATCGTGCAGAAAGGTCATCAACTCGCACACAGAGTGGG
ACCCACTCGAGGAGGTGATCGTCGGCCGTGTTGACGGTGCGACTGTTCCT
GAATGGCATGTCTCTGGTAAGGCCGTGTGGCCTGAGAAGCACTGGGACAT
GTACAAGAACCACGCTGGACGCTCGTTCCCCCGAGAGATCGTGCAGAAAG
CCGCGGAAGAGCTCGACAACTTCTCACGCGTATTGGAATTGGAAGGGGTT
ACCGTGCGGAGGCCCGAAGTCCGACCGAGAGATTTTGACCGTCCTGTTAC
TACCCCAGATTTCGAGTCAAAGACACAGCTCTACGCAGCTATGCCTAGGG
ACGTCTTGATCGTGGTGGGTTCTCCGCGGAAGAGCTCGACAACTTCTCAC
GCGTATTGGAATTGGAAGGGGTTACCGTGCGGAGGCCCGAAGTCCGACCG
AGAGATTTTGACCGTCCTGTTACTACCCCAGATTTCGAGTCAAAGACACA
GCTCTACGCAGCTATGCCTAGGGACGTCTTGATCGTGGTGGGTTCT
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