mRNA_H-elongata_contig111079.909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111079.909.1
Unique NamemRNA_H-elongata_contig111079.909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: D7FPU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU2_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.870e-62
Identity = 90/108 (83.33%), Postives = 102/108 (94.44%), Query Frame = 1
Query:   10 RSFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            +SFSNL CFPSLQTLVLDKNDLEDI+ CPTIP+L TLW NNN+VADLP FL+Q+L+RFP ++DLSMMRNPACPGLMDI+RPDMEACR+YRTYVVFRAPQL+TVDGVDV
Sbjct:   61 KSFSNLVCFPSLQTLVLDKNDLEDIKACPTIPTLTTLWFNNNRVADLPAFLDQVLERFPLISDLSMMRNPACPGLMDIKRPDMEACRMYRTYVVFRAPQLVTVDGVDV 168          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: A0A7S2XY06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY06_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.720e-42
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   13 SFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            SF NL  FP L+TL+LDKN LE + GCP + ++ TLW NNN V+DLP F++ ++  FPRL  LSMMRNPACPGLMD+  PD+EACRLYR YV++RAPQL  +D  +V
Sbjct:   82 SFKNLHQFPMLETLILDKNGLEGLEGCPVMETVTTLWFNNNNVSDLPVFMDNLMQCFPRLAYLSMMRNPACPGLMDLITPDLEACRLYRLYVLYRAPQLRALDSTEV 188          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: F0YNY0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNY0_AURAN)

HSP 1 Score: 95.5 bits (236), Expect = 5.060e-22
Identity = 51/111 (45.95%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 TPCRSFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            T  +S   L+ FP LQTLVLDKN L  +                    DL  F++ +   FPR+T LS MRNPACPGLMDI  PD EAC+ YR YV+ R P+L  +D  DV
Sbjct:   41 TGIKSLKALELFPRLQTLVLDKNALVGLIXXXXXXXXXXXXXXXXXXXDLVGFIDDVARLFPRITYLSCMRNPACPGLMDIVTPDEEACKHYRLYVLHRLPRLECLDAADV 151          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: A0A5J4W6E8_9EUKA (Putative leucine-rich melanocyte differentiation-associated protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W6E8_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 8.060e-21
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   10 RSFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDG 324
            RS  N+Q FP L++LV D N ++D    P +PSL TLW+NNN++ ++   L+Q+  R P+L+ LS+M+NPACP    I   + E    YR YV++R P+L  +D 
Sbjct:   69 RSLENVQLFPKLKSLVADNNQIDDSVDFPPLPSLETLWMNNNRITEIKRLLDQLCQRAPQLSYLSLMKNPACPHR--ISGNEDEDYARYRLYVLWRIPKLRFLDS 171          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: K2NP35_TRYCR (Uncharacterized protein n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=K2NP35_TRYCR)

HSP 1 Score: 82.4 bits (202), Expect = 1.150e-16
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    7 CRSFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVD 321
            CR  SNL    +LQTLVLD N+L+++   P +P L  LW+NNN++A L + L  +  + P LT LS++RNP CP  +D   P +E  R YR YV +  P+L  +D
Sbjct:   76 CR-LSNLAA--TLQTLVLDNNELQEVSSLPPLPGLQRLWLNNNRLAGLDDVLTVVSTQCPALTYLSLLRNPCCPSELDGHLP-IEYTR-YRLYVKYMLPKLAHLD 175          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: A0A7S1CND0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CND0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.670e-16
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   67 NDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDG 324
            N+LE + G P +P++  LW+N+NKV+DLP    QI +R P L+ L +MRNPA P L      D +  R +R Y ++  P L  +D 
Sbjct:    1 NELESLEGFPKLPTVTVLWLNDNKVSDLPTLYAQIRERMPSLSFLCLMRNPASPPLAPFSDADAKKIRQFRLYTIYSLPTLQFLDS 86          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: A0A2P6NNU3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNU3_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 1.370e-15
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   19 SNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            ++LQ F  +  LVLD N L+  +  P   +L TLW+NNN++ADL EF+  +   +P LT LSMM+NPACP        D E  + YR +V+ +  +L  +D   V
Sbjct:   60 THLQRFEKINQLVLDNNQLQSKQEFPKNNNLQTLWVNNNEIADLREFIECVRKAYPNLTYLSMMKNPACPNYF--VGKDAEDYQRYRYFVLHKLRKLKFLDATPV 162          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: F0YGL9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGL9_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.130e-15
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  145 DLPEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            DL  F++ +   FPR+T LS MRNPACPGLMDI  PD EAC+ YR YV+ R P+L  +D  DV
Sbjct:   89 DLVGFIDDVARLFPRITYLSCMRNPACPGLMDIVTPDEEACKHYRLYVLHRLPRLECLDAADV 151          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: UPI00067CA7FF (leucine-rich repeat-containing protein C10orf11-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067CA7FF)

HSP 1 Score: 77.8 bits (190), Expect = 3.580e-15
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   13 SFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPG-LMDIQRPDMEACRLYRTYVVFRAPQLITVDG 324
            +   L+ F  L+ L+LD N L D    P +P L TL +NNN+++DL   + QI +RFP LT LS++ N ACP  L D  + D +  R YR +V+F+ P L  +D 
Sbjct:   52 TLKGLEHFGRLEELILDNNKLGDGITFPYLPYLRTLSLNNNQLSDLEALIEQISERFPSLTYLSLLSNKACPNQLSDFDKDDSDYQR-YRYFVIFKLPHLRFLDS 155          
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Match: UPI001D06F011 (leucine-rich melanocyte differentiation-associated protein-like isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D06F011)

HSP 1 Score: 77.0 bits (188), Expect = 1.540e-14
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   13 SFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADLPEFLNQILDRFPRLTDLSMMRNPACPG-LMDIQRPDMEACRLYRTYVVFRAPQLITVDGVDV 333
            +   L  F +LQ L+LD N+L D    P +P L TL +N N + +L + + QI ++ P+LT LS++ N ACP  L DI++ + +  R YR YV+++ P+L  +D   V
Sbjct:  108 NLKGLNGFQTLQELILDNNELNDNIQFPLLPYLHTLSLNKNNITNLEQLIEQIYEKLPQLTYLSLLGNKACPDQLTDIEKDENDYQR-YRYYVLYKLPKLKFLDSTKV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111079.909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU2_ECTSI2.870e-6283.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY06_9STRA6.720e-4260.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0YNY0_AURAN5.060e-2245.95Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5J4W6E8_9EUKA8.060e-2142.86Putative leucine-rich melanocyte differentiation-a... [more]
K2NP35_TRYCR1.150e-1643.81Uncharacterized protein n=7 Tax=Trypanosoma cruzi ... [more]
A0A7S1CND0_9STRA5.670e-1640.70Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2P6NNU3_9EUKA1.370e-1540.00Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F0YGL9_AURAN3.130e-1557.14Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
UPI00067CA7FF3.580e-1540.95leucine-rich repeat-containing protein C10orf11-li... [more]
UPI001D06F0111.540e-1437.96leucine-rich melanocyte differentiation-associated... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111079contigH-elongata_contig111079:1158..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.1e-49
Seed eggNOG ortholog2880.D7FPU2
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-18_001710.1
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.8631222-CDS-H-elongata_contig111079:1157..12951622929635.8631222-CDS-H-elongata_contig111079:1157..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111079 1158..1295 +
1691679100.3627622-CDS-H-elongata_contig111079:1157..12951691679100.3627622-CDS-H-elongata_contig111079:1157..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111079 1158..1295 +
1622929635.879988-CDS-H-elongata_contig111079:1494..16891622929635.879988-CDS-H-elongata_contig111079:1494..1689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111079 1495..1689 +
1691679100.3713725-CDS-H-elongata_contig111079:1494..16891691679100.3713725-CDS-H-elongata_contig111079:1494..1689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111079 1495..1689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111079.909.1prot_H-elongata_contig111079.909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111079 1158..1689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111079.909.1

>prot_H-elongata_contig111079.909.1 ID=prot_H-elongata_contig111079.909.1|Name=mRNA_H-elongata_contig111079.909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
TPCRSFSNLQCFPSLQTLVLDKNDLEDIRGCPTIPSLITLWINNNKVADL
PEFLNQILDRFPRLTDLSMMRNPACPGLMDIQRPDMEACRLYRTYVVFRA
PQLITVDGVDV
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mRNA from alignment at H-elongata_contig111079:1158..1689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111079.909.1 ID=mRNA_H-elongata_contig111079.909.1|Name=mRNA_H-elongata_contig111079.909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=532bp|location=Sequence derived from alignment at H-elongata_contig111079:1158..1689+ (Himanthalia elongata Himel1 dioecious)
ACGCCTTGTAGGTCATTCTCCAACCTCCAGTGCTTTCCGTCGCTGCAAAC CCTAGTGTTGGACAAGAACGACCTGGAAGACATCAGGGGGTGCCCCACGA TCCCTAGCCTTATCACTCTCTGGATCAACAACAACAAGGTGAGAGAGAGT TATCCCGTCGGAGGTTAGGTCAGGTCAGGTCAGGTTAGGTCAGGTTGCTT TAGGTGTCTGTATAAAAGAGACGATCGGCAATGATTTGTCCGACACTTCC TTTTCCCTCTTTTGCCCTCCCATGGCGTGTCTTGTTTGTTTGTATCGCAT TAACGACAACAATAACAACAACAAAAAACAACAACAGGTGGCGGATCTCC CGGAGTTCCTGAACCAAATCCTGGACAGGTTCCCGCGCCTGACCGACCTC AGCATGATGCGCAATCCGGCCTGCCCCGGCCTGATGGACATCCAACGGCC GGACATGGAGGCCTGCAGGCTGTACAGGACGTACGTGGTGTTCCGAGCCC CTCAGCTCATCACCGTGGACGGCGTCGACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig111079:1158..1689+

>mRNA_H-elongata_contig111079.909.1 ID=mRNA_H-elongata_contig111079.909.1|Name=mRNA_H-elongata_contig111079.909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig111079:1158..1689+ (Himanthalia elongata Himel1 dioecious)
ACGCCTTGTAGGTCATTCTCCAACCTCCAGTGCTTTCCGTCGCTGCAAAC
CCTAGTGTTGGACAAGAACGACCTGGAAGACATCAGGGGGTGCCCCACGA
TCCCTAGCCTTATCACTCTCTGGATCAACAACAACAAGACGCCTTGTAGG
TCATTCTCCAACCTCCAGTGCTTTCCGTCGCTGCAAACCCTAGTGTTGGA
CAAGAACGACCTGGAAGACATCAGGGGGTGCCCCACGATCCCTAGCCTTA
TCACTCTCTGGATCAACAACAACAAGGTGGCGGATCTCCCGGAGTTCCTG
AACCAAATCCTGGACAGGTTCCCGCGCCTGACCGACCTCAGCATGATGCG
CAATCCGGCCTGCCCCGGCCTGATGGACATCCAACGGCCGGACATGGAGG
CCTGCAGGCTGTACAGGACGTACGTGGTGTTCCGAGCCCCTCAGCTCATC
ACCGTGGACGGCGTCGACGTTGTGGCGGATCTCCCGGAGTTCCTGAACCA
AATCCTGGACAGGTTCCCGCGCCTGACCGACCTCAGCATGATGCGCAATC
CGGCCTGCCCCGGCCTGATGGACATCCAACGGCCGGACATGGAGGCCTGC
AGGCTGTACAGGACGTACGTGGTGTTCCGAGCCCCTCAGCTCATCACCGT
GGACGGCGTCGACGTT
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