mRNA_H-elongata_contig111016.906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111016.906.1
Unique NamemRNA_H-elongata_contig111016.906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.390e-61
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQ 309
            M+FPG AEDP  +SFIDPVWLQQWGLGPENALDYFALSPFYDK+CNNEQCRMQGVDPREGL NLTGLEFML  +LP EMSFLPPGQPAP GPQPRRLFVIK Q
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFML-VELPPEMSFLPPGQPAPAGPQPRRLFVIKKQ 102
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.590e-58
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQ 309
            MEFPG AEDP  +SFIDPVWLQQWGLGP+NALDYFALSPFYDK+CNNEQCRMQ VDPREGL NLTGLEFML  +LP EMSFLPPGQPAP GPQPRRLFVIK Q
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFML-VELPPEMSFLPPGQPAPAGPQPRRLFVIKKQ 102
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.860e-22
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   16 EAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGV-DPREGLKNLTGLEFMLQADLPEEMSFLP-PGQPAPVGPQPRRLFVIKVQ 309
            E ED    SF D +WL+ + LGPE A+DYFALSPFYD++ NNE CRMQG+ D    ++ +TG+E++++ +LP E   LP PG P    PQPR L VIK Q
Sbjct:   14 EIEDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVE-ELPPETDELPEPGAP----PQPRHLMVIKKQ 108
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.520e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME    A+D Y  SF D VWLQ + L P+  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  +++              P++L+VI+ Q+
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELLPNAAKQL--------------PQQLYVIRKQR 88
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 76.6 bits (187), Expect = 2.440e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME  G  +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  +++              P++L++I+ Q+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELLPNAAKQL--------------PQQLYIIRKQR 88
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  ++M              P++LF+I+ Q+
Sbjct:    1 MEVSAHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELLPNTAKQM--------------PQQLFIIRKQR 88
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A3F2RNL5_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNL5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.250e-14
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L ++  +++              P++LF+I+ Q+
Sbjct:    1 MEVSSHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELLSNAAKQL--------------PQQLFIIRKQR 88
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BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-14
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ +   E LKNL G+E+ L  +  +++              P++L++I+ Q+
Sbjct:    1 MEVVAHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELLPNAAKQL--------------PQQLYIIRKQR 88
[Close]
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A2D4BKI9_PYTIN (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKI9_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 3.720e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+ L  +L +++              P++LF+++ Q+
Sbjct:    1 MEVVSHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYELXPNLAKQL--------------PQQLFLVQKQR 88
[Close]
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A662X429_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X429_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-13
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 312
            ME    A+D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L   LP     LP           ++LF+I+ Q+
Sbjct:    1 MEVVAHADD-YNASFRDTVWLQSFPLTAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL---LPNGAKQLP-----------QQLFLIRKQR 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X0_ECTSI4.390e-6187.38Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5KKW4_9PHAE1.590e-5886.41Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA9.860e-2252.00Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE9.520e-1642.45Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL2.440e-1540.57Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT1.130e-1441.51Mediator of RNA polymerase II transcription subuni... [more]
A0A3F2RNL5_9STRA1.250e-1440.57Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC1.990e-1439.42Mediator of RNA polymerase II transcription subuni... [more]
A0A2D4BKI9_PYTIN3.720e-1439.62Mediator of RNA polymerase II transcription subuni... [more]
A0A662X429_9STRA1.130e-1344.34Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111016contigH-elongata_contig111016:1377..2095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue7.7e-47
Seed eggNOG ortholog2880.D7G6X0
Preferred nameMED6
KEGG koko:K01530,ko:K15128
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
EggNOG OGsCOG5097@1,KOG3169@2759
Ec32 ortholog descriptionMediator complex, subunit Med6
Ec32 orthologEc-01_011940.2
EC3.6.3.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.6555338-CDS-H-elongata_contig111016:1376..15791622929635.6555338-CDS-H-elongata_contig111016:1376..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111016 1377..1579 +
1691679100.2931387-CDS-H-elongata_contig111016:1376..15791691679100.2931387-CDS-H-elongata_contig111016:1376..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111016 1377..1579 +
1622929635.6809213-CDS-H-elongata_contig111016:1962..20951622929635.6809213-CDS-H-elongata_contig111016:1962..2095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111016 1963..2095 +
1691679100.3057694-CDS-H-elongata_contig111016:1962..20951691679100.3057694-CDS-H-elongata_contig111016:1962..2095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111016 1963..2095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111016.906.1prot_H-elongata_contig111016.906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111016 1377..2095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111016.906.1

>prot_H-elongata_contig111016.906.1 ID=prot_H-elongata_contig111016.906.1|Name=mRNA_H-elongata_contig111016.906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQC
RMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVI
KVQKYVRVIRR*
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mRNA from alignment at H-elongata_contig111016:1377..2095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111016.906.1 ID=mRNA_H-elongata_contig111016.906.1|Name=mRNA_H-elongata_contig111016.906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=719bp|location=Sequence derived from alignment at H-elongata_contig111016:1377..2095+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCCCTGGGGAAGCCGAAGACCCGTACACTAAATCATTCATTGA
TCCAGTGTGGCTGCAGCAATGGGGGCTCGGTCCAGAGAATGCTCTTGACT
ACTTTGCGTTGAGTCCATTTTACGACAAATCTTGCAACAACGAACAGTGC
CGGATGCAGGGTGTCGATCCAAGGGAGGGACTAAAGAACTTGACTGGTCT
AGAGTAAGTACTGGTACCGAATATCGACTCCTCTATTATGATATGGTATT
AGCTTCGAATATATATCGGCGTGGTCAATTGCCTGCGCTGATTTTAACGC
AGAGGGCGTTCAGGATGACGTGCTACAGCAAGGGGGGTGGAAAGATTCAT
CGACAAATGATTGGCGAAAACCAAAGATGTGTAAGATTGTAGCTACAGTA
TCGAAGACTGTCGGGAGAACTCCGACCTCTCCTTCGCGAACCGCACTTCT
GTACGATGCAGAAGTGTGCAATGTGATTCGCTGCTTCTCTTTCTCGGCCG
TTCCTGATTGTATTCTCTTGTGATAAAAAAAATACCTACAATATCGAAGG
ATGTCGCATCGGCGTTCTTCGCGCACGATTTTGCAGGTTTATGCTCCAGG
CTGATCTCCCTGAAGAGATGTCTTTTTTGCCACCTGGCCAGCCGGCTCCT
GTCGGGCCTCAGCCTCGACGTCTATTCGTGATCAAGGTACAAAAGTACGT
TAGAGTGATCAGAAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig111016:1377..2095+

>mRNA_H-elongata_contig111016.906.1 ID=mRNA_H-elongata_contig111016.906.1|Name=mRNA_H-elongata_contig111016.906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig111016:1377..2095+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCCCTGGGGAAGCCGAAGACCCGTACACTAAATCATTCATTGA
TCCAGTGTGGCTGCAGCAATGGGGGCTCGGTCCAGAGAATGCTCTTGACT
ACTTTGCGTTGAGTCCATTTTACGACAAATCTTGCAACAACGAACAGTGC
CGGATGCAGGGTGTCGATCCAAGGGAGGGACTAAAGAACTTGACTGGTCT
AGAATGGAGTTCCCTGGGGAAGCCGAAGACCCGTACACTAAATCATTCAT
TGATCCAGTGTGGCTGCAGCAATGGGGGCTCGGTCCAGAGAATGCTCTTG
ACTACTTTGCGTTGAGTCCATTTTACGACAAATCTTGCAACAACGAACAG
TGCCGGATGCAGGGTGTCGATCCAAGGGAGGGACTAAAGAACTTGACTGG
TCTAGAGTTTATGCTCCAGGCTGATCTCCCTGAAGAGATGTCTTTTTTGC
CACCTGGCCAGCCGGCTCCTGTCGGGCCTCAGCCTCGACGTCTATTCGTG
ATCAAGGTACAAAAGTACGTTAGAGTGATCAGAAGATGAGTTTATGCTCC
AGGCTGATCTCCCTGAAGAGATGTCTTTTTTGCCACCTGGCCAGCCGGCT
CCTGTCGGGCCTCAGCCTCGACGTCTATTCGTGATCAAGGTACAAAAGTA
CGTTAGAGTGATCAGAAGATGA
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