mRNA_H-elongata_contig1110.902.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A6H5K089_9PHAE (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K089_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 1.080e-144 Identity = 236/381 (61.94%), Postives = 279/381 (73.23%), Query Frame = 1
Query: 646 VRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVD-------NMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGD---LATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSVVNASLYRRSSGKTAAVVMSQAADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDMWQTAKVILRASGTPEQRQEFEELQELQW----KTAPIGGRGAPRYLKNG 1746
V ED+ APIDW+LSRRLP SRRFYR+ALE G VKVDGR VKRF+RV RG+ ISVD + +FPQRLP LRV++ED H VV+KPAGM+CQPC AA GTVLHGL++HMVQ Q +EG A A LSQGIVQRLDK TSG+MVVAK L A+SK S+L G +K+QY+A+CHGDPGFDSVV+A LYRRSSGK AV +A +F AK AQTRVRNVAT GLSLCRAD+ GRMHQVRVHLKW CP+VGD++YGD EAN RV+KR R + +RPLLHS++LEF HPFTN+PM F+APMPPDMW+TA+ ILR SGTPEQ++ F +LQEL+ + AP+GGRGAPR G
Sbjct: 137 VSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEVQRPLLHSVSLEFIHPFTNKPMSFKAPMPPDMWETAQNILRMSGTPEQQEAFGKLQELRQSQADEAAPVGGRGAPRMAAGG 517
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A835YI41_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI41_9STRA) HSP 1 Score: 221 bits (562), Expect = 2.440e-60 Identity = 143/374 (38.24%), Postives = 199/374 (53.21%), Query Frame = 1
Query: 640 LNVRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHG------------DPGFDSV----VNASLYRRSSGKTAAVVMSQ----------AADFGAKNAQTRVRNVATT-------------GGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDY---GDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDMWQTAKVIL 1635
+ V ED NAPIDWLLSR+LP SRRF+R+ L G+V++DGR KR VRV G TI+V AA A D + P + P + +L V+YED H VV KP G+V QP + GT+L+G+LHHMV + + GD A+ L QG+V RLD+ TSG+++VAKNL A+S S++ + + Y+A+ G D G D ++A LY+R+SGK A Q A+ K A TRV+ + + GGL + ++T GR HQ+R HL PV+GD Y GD+ A R A + RPLLH+++L HP TN + AP+P DMW+ ++
Sbjct: 8 ITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITV------AAAAADA----VAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAA----LGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVV 367
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A7S3XRN0_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRN0_HETAK) HSP 1 Score: 190 bits (483), Expect = 3.500e-50 Identity = 117/329 (35.56%), Postives = 181/329 (55.02%), Query Frame = 1
Query: 646 VRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTIS--VDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSVVNASLYRRSSGKTAAVVMSQ----AADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDMW 1614
V E++ AP+DW L+ P SRR++R+ ++ G VKV+G+TV+RF ++ G + +++ + GA + + L VL+ED V+KPAG+VC P ++ SGTVL+GLLHH ++ Q + + LS+GIV RLDK TSGVM+ AKN AA K S + ++Y+ +C+G +VV +YR +GK A + Q ++ K++++ V+ + GLSL ++ GRMHQ R+HLK+ P++GD YG + N+ + + VD R LLH+ L HP T + AP+P DMW
Sbjct: 62 VDSENNGAPLDWYLAHSFPQKSRRYFRKKIQDGEVKVNGKTVRRFAKLRTGQVLDLEIEDFAKEIEGAENLS-----------------LSVLFEDDDLVAVLKPAGVVCYPVDSQKSGTVLNGLLHHFLETEQQVFAN--SIETLSKGIVHRLDKDTSGVMIFAKNQKAAKKLSQSFESRETVKRYLGVCYGHVEPKTVVEEPVYRTKNGKMAVLSKKQDTSVISESRVKDSKSVVKCLMHRQGLSLVEVELITGRMHQARLHLKYLGAPILGDPIYGLARVNKDAYQ--DLGVD--RALLHASRLIVQHPRTGEKLDLSAPVPSDMW 367
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A7S2USK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK5_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.070e-44 Identity = 138/395 (34.94%), Postives = 190/395 (48.10%), Query Frame = 1
Query: 646 VRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPE---LRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMV------------------QKNQAEEGDLA------------------------TAR---NLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGD--PGFDSVVNASLYRRSSGKTAAVVMSQ-------------AADF---------GAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKL-CPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
V +D + P+D +L+R+ P SRRF+R+ ++ G VKVD + VKR ++ +G +S A P P PE L VL+ED H V KP GM+ P E+ +GTVLHG+LH + Q+N EE TAR L+QG+V RLD TSGV++VAKN AA + ++K++Y+A+ GD PG + L R SSGK A +Q DF GA+ A T VR +AT G LS+ A++ GRMHQ+RVHL + CPV+GD YGD++ NRR + N +V R LLH+ +LEFTHP T + + P+P DM
Sbjct: 57 VGKKDDDWPLDIVLTRQYPEKSRRFFRKIIQAGRVKVDEKEVKRLSKIRKGQLVS----------------AQFKPDEK--PSMEPEDLGLEVLFEDEHLIAVAKPPGMIVHPVESCETGTVLHGVLHLLTTPREKVTPKETAAQPEGNQENAQEEDTKVERKPEKNAKKGGPDPWDPAKPLKLTARLCTGLAQGVVHRLDSDTSGVVLVAKNAPAARGMAKQFQQRSVKKKYMAVVVGDLGPGVHHLT-LPLLRTSSGKMAVFQEAQPEWGEEMAGGDMLTGDFTDVGEADAKGARGATTIVRRLATDGQLSVVGAEILTGRMHQLRVHLAQEANCPVLGDPVYGDTDWNRRAKRSENLQVS--RTLLHAHSLEFTHPITGKHVSLSTPVPLDM 430
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK) HSP 1 Score: 168 bits (426), Expect = 3.930e-42 Identity = 113/326 (34.66%), Postives = 164/326 (50.31%), Query Frame = 1
Query: 655 EDHNAP-IDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQ----AEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSVVNASLYRRSSGKTAAVVMSQAADFGAK--NAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
E++N +D LS P SR ++ ++G V+V GR VK+ ++ G +SV + + A P+ +P L +LYED H V KP GMV P + SGT + L HM + + A GD L GIV RLDK TSGV++ +KN +K S + IK+ Y+A+C G+PG D + + R + V+ + + A+ A T V ++ LSL R + GR HQ+RVHL + PV+GD+ YG+ + NRR KR + RPLLH+ LE HP T P+ +AP+P DM
Sbjct: 73 EEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAE--------------PEDIP-LDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGEDYRAAGGGDA-----LRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTYLAVCVGNPGQDVKIENLIARHPKNRQKMCVIHETQEGAARARTAVTLVDGLSFDSQLSLARVQIETGRTHQIRVHLAHRRTPVLGDELYGNGDQNRRAVKRFGLQ----RPLLHAYQLELDHPITGEPLSLKAPVPEDM 374
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A6M1ZVU5_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZVU5_9BACT) HSP 1 Score: 157 bits (398), Expect = 2.100e-39 Identity = 107/331 (32.33%), Postives = 169/331 (51.06%), Query Frame = 1
Query: 646 VRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSVVNASLYRRSSGKTAAVVMSQAADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDMWQTAKVILR 1638
V E+ +D LL+ R P +SR ++++ ++R V V+G+ VK+ + + I + + ++P L P+ +P L +LYED V+ KPAG+V P SSGT+++GLL H Q L A +L GIV RLDK TSG++V AKN A K S+L + + ++Y+AIC +PG + +++ + R + ++ + + AQT ++ G LSL R GR HQ+RVHLK P++GD YG+ N++ LLH+ L F HP + + F+AP+P DM + I+R
Sbjct: 8 VTEEEEKLRLDTLLATRFPELSRTYFQQLIDRQLVLVNGKQVKKRIHLRSADEIEIQFV--------------LSPEISLEPEEIP-LDILYEDEELLVINKPAGLVVHPGAGHSSGTLVNGLLFHCKQ--------LKAAESLRPGIVHRLDKGTSGLLVAAKNEEAQMKLSTLFANRQVHKEYLAICISNPG-NRLIDQPIGRHPVRRKEMTILKERG----REAQTETHSLVHNGELSLVRLIPKTGRTHQLRVHLKSIRAPILGDPVYGNHYLNKKYGLTHQ--------LLHAEILRFVHPISGEKVEFKAPIPEDMQKIIDSIIR 302
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A836CH15_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.900e-39 Identity = 108/320 (33.75%), Postives = 165/320 (51.56%), Query Frame = 1
Query: 658 DHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRT-VKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSVVNASLYRRSSGKTAAVVMSQAADFG-AKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
D ID L ++P SR ++ +G V V+G + VK+ +V G ISV +++ L P+ +P L V++ED + KP GMV P +GT ++ LLHH+ + L + +L G+V RLDK TSGV++ AK + S L D +++ Y+A+C G+PG D ++ + R ++ + V + A+ A + VR A G LS+ + GR HQ+RVHL+ + P+VGD+ YG+ + NRR+ KRG R PLLH++ LEFTHP T + AP+P DM
Sbjct: 62 DAGQRIDAFLCSKVPDQSRTYFGDLCTKGCVCVNGSSAVKKSHKVTAGQIISVRFLATAELN--------------LGPEDIP-LDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSKDGSVVS--LGESGDLRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKVRKTYLAVCAGNPG-DDAIDVPIGRHATNRQKMVAVPDIQPGARARRALSHVRCTAFDGSLSVAEVRIETGRTHQIRVHLQHRRTPIVGDELYGNRDWNRRLQKRGISR-----PLLHALRLEFTHPTTGAALRLEAPLPEDM 358
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A2V8LI45_9BACT (Pseudouridine synthase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8LI45_9BACT) HSP 1 Score: 156 bits (394), Expect = 6.850e-39 Identity = 118/327 (36.09%), Postives = 173/327 (52.91%), Query Frame = 1
Query: 634 LVLNVRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDS-VVNASLYRRSSGKTAAVVMSQAADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
+ L P+D +D L+R L ++R + G+V ++GR K ++ G TI +D GA + A P+TP ++LP L++ +ED AVV KPAG+V P GT++HGLL H +N ++ G +N GIV RLDK TSG+++VAKN A ++ S D I++ Y+A+ HG P DS + S+ R S +T M+ A + G ++A T R V G SL + GR HQ+RVHL PVVGD YG+ + N+ V K G R LH+ AL F HP T+ P+ F +P+P ++
Sbjct: 1 MKLQPGPDDRGLRLDVFLARHLENLTRSQIQLLNRSGAVLIEGRHDKAGYKIRGGETIEID------LGALEPA--PLTP------KQLP-LQIYFEDEDLAVVEKPAGVVVHPGSGTGGGTLVHGLLFHF--QNLSDMG----GKN-RPGIVHRLDKWTSGLIIVAKNNVAHARLSQAFQDRQIQKSYLALVHGRPRLDSGTIELSIGRHPSIRTK---MAAATEKG-RSAYTEYRVVEQFRGFSLVELKIKTGRTHQIRVHLSAIGHPVVGDDVYGERQYNQFVKKHGELN----RYFLHAAALGFNHPSTHVPLKFHSPLPEEL 297
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A0H5E3K8_9BACT (Pseudouridine synthase n=1 Tax=Estrella lausannensis TaxID=483423 RepID=A0A0H5E3K8_9BACT) HSP 1 Score: 150 bits (380), Expect = 9.700e-37 Identity = 100/306 (32.68%), Postives = 149/306 (48.69%), Query Frame = 1
Query: 703 IMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLATARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPG---FDSVVNASLYRRSSGKTAAVVMSQAADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
+ SR +++ + G V V+G VK+ R G + V + +TP L + +P LR+LYED + KP GMV P SGTV++ LL H + + + + ++ GIV RLDK TSGV++ AK+ + K L + ++Y+A+C G+PG D + Y R K D G K A T +AT G +SL + + GR HQ+RVH++ K PV+GD YG N++ R LLH+ L F HP T +P+ F+AP+PPD+
Sbjct: 35 VKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFI--------------LTPELNLAAENIP-LRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTRLKEEFQQE-----HIRPGIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEYLAVCLGNPGRGIIDKPIGRDPYHRKQMKVL--------DEGGKRAVTEFETLATDGQVSLVKIILKTGRTHQIRVHMQSKNAPVLGDSLYGSIAVNKKWKAE--------RQLLHAYRLSFLHPMTKKPITFQAPLPPDL 304
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Match: A0A8J5XTC5_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XTC5_DIALT) HSP 1 Score: 155 bits (391), Expect = 2.420e-36 Identity = 106/343 (30.90%), Postives = 168/343 (48.98%), Query Frame = 1
Query: 640 LNVRPEDHNAPIDWLLSRRLPIMSRRFYRRALERGSVKVDGRTVKRFVRVARGSTISVDNMSSVAAGARDRAGAPITPTNYLFPQRLPELRVLYEDPHCAVVVKPAGMVCQPCEAASSGTVLHGLLHHMVQKNQAEEGDLA------------------TARNLSQGIVQRLDKATSGVMVVAKNLNAASKFSSLCDDGNIKQQYVAICHGDPGFDSV-VNASLYRRSSGKTAAVVMSQAADFGAKNAQTRVRNVATTGGLSLCRADVTNGRMHQVRVHLKWKLCPVVGDKDYGDSEANRRVAKRGNFRVDQRRPLLHSMALEFTHPFTNRPMFFRAPMPPDM 1611
L V P++ + +D LL R + SR ++ +G V +DG + R+ G+ +SV + AR P+R+P L +LYED H V+ K AG+V P GT+++G+L H++ G R + +V RLDK T+G + AK+ + SSL +++ Y+A+C GDPG D + + + R + + V+++A G ++A++ VR + G SL R D+ GR HQ+RVH++ P+VGD +YG + N+ K + RRPLLH+ L F HPFT R + F AP+P D+
Sbjct: 180 LTVLPDEADLRLDRLLVGRFELQSRTYFASLCAQGLVTMDGMRAAKGDRLRVGAVVSVQFTPTAEMEAR--------------PERMP-LDILYEDAHLLVLNKAAGVVVHPAPGHWEGTLVNGVLFHLLGNGHGAAGAXXXXXXXXXXXXXXXXXXXDALRAPTSTVVHRLDKGTTGAIAFAKSAESQRALSSLFRLRQVRKSYLAVCVGDPGADPIEITHPIGRDKANRLRMTVVAEA--DGGRSARSVVRRLCYDGRFSLVRVDIFTGRTHQIRVHMRAHGLPLVGDDEYGSKQWNQAALKG----LGVRRPLLHAHRLAFEHPFTQRALAFEAPLPDDL 501 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1110.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1110.902.1 >prot_H-elongata_contig1110.902.1 ID=prot_H-elongata_contig1110.902.1|Name=mRNA_H-elongata_contig1110.902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=539bp MITIRHTRFSLVCAVFSSCAVRASGLALVTPWTRPRQLDRSALGMAAEAGback to top mRNA from alignment at H-elongata_contig1110:4168..7894- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1110.902.1 ID=mRNA_H-elongata_contig1110.902.1|Name=mRNA_H-elongata_contig1110.902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3727bp|location=Sequence derived from alignment at H-elongata_contig1110:4168..7894- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1110:4168..7894- >mRNA_H-elongata_contig1110.902.1 ID=mRNA_H-elongata_contig1110.902.1|Name=mRNA_H-elongata_contig1110.902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3234bp|location=Sequence derived from alignment at H-elongata_contig1110:4168..7894- (Himanthalia elongata Himel1 dioecious)back to top |