mRNA_H-elongata_contig100969.90.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100969.90.1
Unique NamemRNA_H-elongata_contig100969.90.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100969.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100969contigH-elongata_contig100969:14..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size126
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100969.90.1prot_H-elongata_contig100969.90.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100969 20..158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.9328167-UTR-H-elongata_contig100969:13..191622929550.9328167-UTR-H-elongata_contig100969:13..19Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100969 14..19 +
1691679065.7758973-UTR-H-elongata_contig100969:13..191691679065.7758973-UTR-H-elongata_contig100969:13..19Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100969 14..19 +
1622929550.9783971-UTR-H-elongata_contig100969:158..1851622929550.9783971-UTR-H-elongata_contig100969:158..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100969 159..185 +
1691679065.814292-UTR-H-elongata_contig100969:158..1851691679065.814292-UTR-H-elongata_contig100969:158..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100969 159..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929550.9469712-CDS-H-elongata_contig100969:19..831622929550.9469712-CDS-H-elongata_contig100969:19..83Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100969 20..83 +
1691679065.7852106-CDS-H-elongata_contig100969:19..831691679065.7852106-CDS-H-elongata_contig100969:19..83Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100969 20..83 +
1622929550.9665248-CDS-H-elongata_contig100969:96..1581622929550.9665248-CDS-H-elongata_contig100969:96..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100969 97..158 +
1691679065.801849-CDS-H-elongata_contig100969:96..1581691679065.801849-CDS-H-elongata_contig100969:96..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100969 97..158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100969.90.1

>prot_H-elongata_contig100969.90.1 ID=prot_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVVDGRDGRRRGKREDREDPGISTRFSLGWENEQADAGRDC*
back to top

mRNA from alignment at H-elongata_contig100969:14..185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100969.90.1 ID=mRNA_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=172bp|location=Sequence derived from alignment at H-elongata_contig100969:14..185+ (Himanthalia elongata Himel1 dioecious)
GACCCGATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAACGGGA
GGATCGAGAGGATCCCGGGAGTATGCCCGGGAGTAAGCACGAGATTCAGC
CTGGGTTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCTGAACCCG
TGTCGCGAGACCAAATTCTCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100969:14..185+

>mRNA_H-elongata_contig100969.90.1 ID=mRNA_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig100969:14..185+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAACGGGAGGATCG
AGAGGATCCCGGGAATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGA
AAACGGGAGGATCGAGAGGATCCCGGGATAAGCACGAGATTCAGCCTGGG
TTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCTGATAAGCACGAG
ATTCAGCCTGGGTTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCT
GA
back to top